Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02090 ATGAGATTCCAAAAGACTTATAAATACGATGCCCGAAATAAGGCTATCGCCGCCTCCATCGCCACCGCTATCACCACCACTATATCCATTCGTGTCCTTGCCGCCACCGCATGCTTCGATAATCTCTTTTTGCGTTGTCTCCTCCGTCGATGCATCATCTCCTTTGGTCGCGACACGATGGAAGAGCCTGTCGTAGTTAACAAAGGCAAGGAGCCGCTGGATTTGCCACCAGGTTTCGGATTCCACCCAACAGATGAAGAAATCATCACTTATTACCTCACCGAGAAGGTCATGAACAGCAGCTTCAGTGCAACTGCCATAGGTGAAGCCGATTTGAACAAATCCGAACCCTGGGATTTACCAAAGAAAGCAAAGATGGGAGAGAAGGAGTGGTACTTCTTTTGTCAGAAAGGTTGCAGAATTGCAGACAAGGACCTTGATCTTCCTTCTCATAAGATTATGCTTGCTACTGTTCGATATGAAGAAATTTTTCGGGAAAAGTATAAAGCTGCAAAGGAGAATGTTAGTGGAATCATAAAGCCCAGAAGAATGACTCTGgatgtgtttgggaaactcgttagaagggaagaagtacATTTAAAAAAATCAGGGAGAGTAACATACAATGGGCATGGAGTAGAAGAGTTTGTGGCACAGAGAAGTTCAGCGTATATTGGCTCATGGGCAAGTGATAGAGAAGAAATTAATCTCCATGGTTCGTGA 723 0.4219 MRFQKTYKYDARNKAIAASIATAITTTISIRVLAATACFDNLFLRCLLRRCIISFGRDTMEEPVVVNKGKEPLDLPPGFGFHPTDEEIITYYLTEKVMNSSFSATAIGEADLNKSEPWDLPKKAKMGEKEWYFFCQKGCRIADKDLDLPSHKIMLATVRYEEIFREKYKAAKENVSGIIKPRRMTLDVFGKLVRREEVHLKKSGRVTYNGHGVEEFVAQRSSAYIGSWASDREEINLHGS 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02090 240 Pfam No apical meristem (NAM) protein 76 138 IPR003441 GO:0003677|GO:0006355
Aip04g02090 240 Gene3D NAC domain 84 146 IPR036093 GO:0003677|GO:0006355
Aip04g02090 240 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 62 138 - -
Aip04g02090 240 SUPERFAMILY NAC domain 70 143 IPR036093 GO:0003677|GO:0006355
Aip04g02090 240 ProSiteProfiles NAC domain profile. 75 236 IPR003441 GO:0003677|GO:0006355
Aip04g02090 240 PANTHER NAC DOMAIN-CONTAINING PROTEIN 100-LIKE 62 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02090 Aip-Chr4 97192742 97197390 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02090 60 137 NAC Transcription Factor Family AT5G18270 75.949 4.58e-35 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Aip04g02090 NAM 7.2e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02090 - - aip:107639226 181.03