Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02071 ATGCAACTCAAGAAGGCACTGTTTGGTTGTTACATGGCTTTTTTCTCTTCTGACACCATCAAAGGCATGTCCAAGGAGATTCAATTCCCAGAAATTCCTTCTCTGCCTGTGGCCAGGTTCCAGAATTTGCAGTGTCTAGGAGAAGATGATGATGAGACTTGCTCCATTTGCTTGGTGGAGTTTGAAGATGAAGATGCTGTGAGCAAGCTTAGAAGATGTAACCACATATTCCATCTTAGTTGCATTCAGCAATGGATAGAGCGAAATCAATTCTCATGCCCATTTTTGTCGGCGAGGCAACTCCCACCAGCCACGAACGACGCGCGCAACGGAGATTGGGCGCTGCAGTTCGGGACGACGCTGATGGACGAAGCAGTTGCTGCCAGTGATGGTAGAGGCGCACGAAGGAGACTAGGCGCTACAGTTCTGAACGGTGCCGACGCAGGTTCCAGGTCAGGTGGAGGCGCAGGGATTGGATGTTCAGCGGCAAAGGAGGAGGGTTTTTGGGGGTAG 513 0.5088 MQLKKALFGCYMAFFSSDTIKGMSKEIQFPEIPSLPVARFQNLQCLGEDDDETCSICLVEFEDEDAVSKLRRCNHIFHLSCIQQWIERNQFSCPFLSARQLPPATNDARNGDWALQFGTTLMDEAVAASDGRGARRRLGATVLNGADAGSRSGGGAGIGCSAAKEEGFWG 170
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02071 170 PANTHER RING ZINC FINGER PROTEIN-RELATED 2 96 - -
Aip04g02071 170 SUPERFAMILY RING/U-box 47 94 - -
Aip04g02071 170 ProSiteProfiles Zinc finger RING-type profile. 54 94 IPR001841 -
Aip04g02071 170 SMART ring_2 54 96 IPR001841 -
Aip04g02071 170 Pfam Ring finger domain 53 95 IPR001841 -
Aip04g02071 170 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 101 IPR013083 -
Aip04g02071 170 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 2 96 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Aip04g02071 Aip-Chr4 96348850 96351398 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02071 48 112 C3H Transcription Factor Family AT4G38140 41.791 4.89e-15 66.6
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02071 - K16281 mtr:MTR_1g115270 116.701