Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02070 ATGAATTTGGCCATAAGGCATATAACCATGATTAAAAATTGCTTTGGTGCTTTGAATTGGTGTAGAGGGAGGGATGATAGTGATACTGCTGAGAAGCCACAGGAACAAGTCATTGCAACCAAACAATTTACCTATAACTCGTTGCGATCGGCAACCAGAGATTTTCACCCTTCAAGCAAACTTGGTGGAGGAGGTTATGGAGTTGTCCACAAGGGAGTTTTAAGAGATGGTACTCCAGTCGCTATCAAGTCTCTTTCTGTTGAGTCTAAACAAGGAACCCGTGAATTTATGACTGAAATTGATATGATATCGAATATACGGCATCCAAATCTTGTCGGACTAGTTGGCTGCTGTGTCGAGGGTAGTCATCGAATATTGGTGTATGAATTTCTGGAGAACAATAGCCTTGCAAGTTCTTTGCTTGGTTCTAAAAGTAAATATGTTGCTCTGGATTGGCCGAAGAGGGCTGCTATTTGCCGCGGTACAGCTTCTGGTTTGGTGTTCCTCCATGATGAGGCTCAGCCAAACATTGTTCATAGAGATATCAAGGCCAGCAACATCCTTCTGGATGAGAACTTCAGCCCGAAAATTGGAGATTTTGGTCTTGCGAAACTTTTTCCTGATAATGTCACCCATGTTAGCACTCGAGTTGCAGGAACGGTGGGATATCTGGCACCGGAATATGCACTTCTAGGACAGCTTACAAAGAAAGCAGATGTATATAGTTTTGGGGTTCTCATGCTTGAAATAATCAGTGGTAAAAGTAGTAGCCAAGCTGCATTTGGAGACAATCTCTTGGTTCTGGTGGAGTGGGCTTGGAAGCTCAAGGAGGAAAATAGGCTTCTGGACATGGTCGATCCGGAACTAGCCGAATTCGATGAGATGGAGGTTTTCCGGTTCATTAAGGTTGCTCTATTTTGCACTCAGGCTGCCGCTCAGAATCGGCCTAACATGAAGCAAGTGATGGAAATGCTCTCAAAGGAAGTTCATATTAACGAGAAGGCGTTGACTGAGCCTGGAATATACAGATGGCATAGCTCTGGTAAGATGGGTGGTTCTTTGAATGAGACACCATCTTCTCAACTATTCAAGAACAAAAAAACCGGAATGCCGCATGAAAACTCAACGAACTTTAGCGGAAACGACGTCGTGACAGAGATGCTCCCCAGATAA 1173 0.439 MNLAIRHITMIKNCFGALNWCRGRDDSDTAEKPQEQVIATKQFTYNSLRSATRDFHPSSKLGGGGYGVVHKGVLRDGTPVAIKSLSVESKQGTREFMTEIDMISNIRHPNLVGLVGCCVEGSHRILVYEFLENNSLASSLLGSKSKYVALDWPKRAAICRGTASGLVFLHDEAQPNIVHRDIKASNILLDENFSPKIGDFGLAKLFPDNVTHVSTRVAGTVGYLAPEYALLGQLTKKADVYSFGVLMLEIISGKSSSQAAFGDNLLVLVEWAWKLKEENRLLDMVDPELAEFDEMEVFRFIKVALFCTQAAAQNRPNMKQVMEMLSKEVHINEKALTEPGIYRWHSSGKMGGSLNETPSSQLFKNKKTGMPHENSTNFSGNDVVTEMLPR 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02070 390 SUPERFAMILY Protein kinase-like (PK-like) 34 325 IPR011009 -
Aip04g02070 390 ProSiteProfiles Protein kinase domain profile. 55 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g02070 390 Gene3D Phosphorylase Kinase; domain 1 21 130 - -
Aip04g02070 390 CDD STKc_IRAK 61 327 - -
Aip04g02070 390 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 13 368 - -
Aip04g02070 390 MobiDBLite consensus disorder prediction 367 390 - -
Aip04g02070 390 ProSitePatterns Serine/Threonine protein kinases active-site signature. 177 189 IPR008271 GO:0004672|GO:0006468
Aip04g02070 390 MobiDBLite consensus disorder prediction 367 383 - -
Aip04g02070 390 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 13 368 - -
Aip04g02070 390 Gene3D Transferase(Phosphotransferase) domain 1 131 339 - -
Aip04g02070 390 SMART serkin_6 55 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g02070 390 ProSitePatterns Protein kinases ATP-binding region signature. 61 83 IPR017441 GO:0005524
Aip04g02070 390 Pfam Protein tyrosine and serine/threonine kinase 58 325 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02070 Aip-Chr4 96338983 96343424 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02070 43 340 Receptor kinase-like Gene Family AT1G56120 53.691 5.43e-106 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Aip04g02070 PK_Tyr_Ser-Thr 2.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02070 - - gmx:100816683 613.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g02070 04 96338983 96343424 Aip04g02070 04 96338983 96343424 ECH