Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02053 ATGTTGCCATTCTTCCCAAGGCTTAATCCCATGAAGCTCTTAGCAATGTGTTGCCTTCTTTTAATGAGTGTTACAACTTCCATGACTACCACTTCAGTTGCTATTCAAGGCAACGAAGAAGCGTATGCTTTGCTGGACTGGAAAGCCAGCTTTGAGAAGCAAAGCCAGGCTTTGCTCTCTTCTTGGAATGGTAGCGACCCCTGCCATTGGGTGGGAATAGCATGTGATCACTCCAAATCTGTGTCCTCGCTAAATTTTACCAAATTTGGCCTAAGAGGTACGCTTCAAACTCTCAATTTCTCGTCACTTCCCAACATCCATACAATAGCCATGAGTAACAACTCGTTTTATGGAACCATTCCCAAACAAATTGGTGTATTATCCAATCTGGACACTCTTGATGTCCACTACAATCAGTTCTCTGGTTTCATTCCCAAACAAATTGGTAGTTTGTCTAAACTCACCGTTCTTGATTTGGGTGCCAACAATTTCTTGGGCAACATTCCCCAAGAAACTAAGCATTTGAGCAACTTGAAGTATTTGGCATTTGCATACAATAATAATTTAAGGGGATCCATTCCTGCCGAACTTGGGATGTTGGGGAATCTAACAGACCTGCGTTTTGAACACTGCAATCTCACAGGTTCTATTCCTACTACAATAGGCAACTTAACTAATTTGTCTGTACTTAATTTGAATGACAACCATTTAGATGGTCCCATTCCTCGAGAAATAGGCAAGTTAGTTAATGTGAAGTATCTATGGCTTCAAAACAATGAACTTTCTGGTTCCATTCCTCAAGAAATTGGTCTCATGACAAATCTCTTCCAGCTTGATTTTTCTTCAAACAATCTCTCTGGTTGTATTCCTTCCACAATTGGAAACTTAAGTAATTTGGCATACCTATACCTTTTTCAAAACTTTTTCTCCGGTTCCATTCCAGATGAAGTTGGAAAACTTTATTCTCTTACTACGATTCAGTTGTTAACTAATAACCTTTCAGGGACAATTCCGCCTTCCATAGGTAACCTTGTCAATCTAAACTCTATTCTTCTTCGGGATAATACACTCCTTGGGCCAATCCCTTCCACTATCGGAAAATTAGTTAATTTGGTTCTCCTTGACCTTAGTGGAAATATGCTCTCTGGTACAGTTCCATTTTCTATTGGAAACTTGACAAAACTGTCGAAACTAGTGTTATTGTCGAATGAACTTAGTGGTGAAATTCCAATAGAGCTCATCAAGCTCACAGAATTGGAAGATCTCCAATTGGCTTATAATCATTTCAATGGGCAGTTGCCTCACAACATCTGTACAAGTGGAAATTTGGCTAAACTTTCAGCCACAAATAACTACTTCACAGGTGTAGTTCCAAGTAGCTTAAAGAATTGCTCCAGCCTTGTAAGATTAAGGCTTGACGGAAACCAGATAACCGGAAATATAACTGAATCTTTCAATGTATATCCAAATTTGGACTACATTGATTTGAGTGAGAATAATTTTCATGGCCACCTTTCATCAAAGTGGGGAAAATGTTCCAACCTGACGTGCCTCAGGATCTCCAACAACAACTTGTCAGGTGCCATACCACCGGAATTAGGTGAGGCAACCAACTTACAAGAACTTGACTTGTCTTCAAATCATCTTACGGGAGCTATTCCAAAAGAGCTTGGCAAGTTGACTTTGATGATACAACTCTTGTTAAGCAACAACAGTTTTTCCGGAAATGTTCCCATTCAGATTTCTgttggAATTTTCATCAAATCAATTTCATCATTGCAACAACTTGAAACGTTGGATCTTGCCAGGAACAATTTCAGAGGCCTCATCACAAAAGAACTTAGCATGTTGCCTAAGTTGTCCAACTTGAGTCTGAGCCAAAATGAATTTAATGGAACTATTCCTCTCGAGCTTGGGAATCTAAAAGCCCTTCGTGACCTTGATCTTGGTGACAATCTTTTAGATGGAACTATTCCAGCATCACTTGGGCAATTGATGTTCTTAGAAAATCTGAACCTCTCTCATAACAATCTTTCTGGTGTCATTCCCTCAAGTTTTGATGGGATGTTAAGTTTGACAACTGTGGATATATCATACAACCAATTAGAAGGCCCACTTCCAAATATTCGAGCCTTCATAAAAGCTCCATTGGAAGCATTGAGAGATAATAAAGGTTTGTGTGGTAATGTCACTGGTATTGAGCCTTGTCCAGCGTCATCAAGTGGGTTTGGATCTGTCTACCGAGCTGAGTTGTCCACCGGTCAAGTTGTTGCCGTGAAAAAACTCCATTCAATACCAAATGAAGAAGTTCCCAATCTCAAAACTTTCCAGAGTGAGATTCAAGCCTTGACAGAAATCCGTCATCGCAACATTGTGAAGCTATATGGATTCTGTTCTCATTCTCGGCACTCCTTTTTGGTTTATGAGATTATAGAAAGAGGTAGCATTGACAAGATTCTAGCCAATGATGAAGAAGCGGTCGAGTTTGATTGGAATAGGAGGGTGAATGCTGTTAAAGGAGTAGCTAATGCTTTATGCTACATGCACCATGATTGTTCACCTCCTATAGTGCATAGAGATATATCAGCAAAAAATGTTCTTCTGGATTTGGAACATGAGGCTCATGTGTCAGATTTTGGAGCATCTAAACTTCTTAATCCAAATTCATCAAATTGGACCTCTTTTGCAGGGACCTTTGGTTATGCAGCTCCAGAACTTGCTTACACTATGGAGGTGAATGAAAAATGTGATGTGTATAGCTTCGGGATATTAGCTTTGGAAATACTGTTGGGGAAGCATCCTGGAGATGCTGCATCATCATCTATGGTGATGATACCATCTTCAGAGACACTTGATAATAAGTTTCTCTTAAAGGATAAGTTGGATCATCGTCTTCCTTACCCTACAAATCTAATTGCAGTAGAGATTATGCAAATTGTGAAGATAGCAAGTGCCTGTTTGACAGAAAATCCACGTTCTCGTCCTACCATGGAACAAGTGGTGAAAGATCTTGTGGTGGCAAACGCTTCAGTTTCAACAATGGATTAA 3048 0.3963 MLPFFPRLNPMKLLAMCCLLLMSVTTSMTTTSVAIQGNEEAYALLDWKASFEKQSQALLSSWNGSDPCHWVGIACDHSKSVSSLNFTKFGLRGTLQTLNFSSLPNIHTIAMSNNSFYGTIPKQIGVLSNLDTLDVHYNQFSGFIPKQIGSLSKLTVLDLGANNFLGNIPQETKHLSNLKYLAFAYNNNLRGSIPAELGMLGNLTDLRFEHCNLTGSIPTTIGNLTNLSVLNLNDNHLDGPIPREIGKLVNVKYLWLQNNELSGSIPQEIGLMTNLFQLDFSSNNLSGCIPSTIGNLSNLAYLYLFQNFFSGSIPDEVGKLYSLTTIQLLTNNLSGTIPPSIGNLVNLNSILLRDNTLLGPIPSTIGKLVNLVLLDLSGNMLSGTVPFSIGNLTKLSKLVLLSNELSGEIPIELIKLTELEDLQLAYNHFNGQLPHNICTSGNLAKLSATNNYFTGVVPSSLKNCSSLVRLRLDGNQITGNITESFNVYPNLDYIDLSENNFHGHLSSKWGKCSNLTCLRISNNNLSGAIPPELGEATNLQELDLSSNHLTGAIPKELGKLTLMIQLLLSNNSFSGNVPIQISVGIFIKSISSLQQLETLDLARNNFRGLITKELSMLPKLSNLSLSQNEFNGTIPLELGNLKALRDLDLGDNLLDGTIPASLGQLMFLENLNLSHNNLSGVIPSSFDGMLSLTTVDISYNQLEGPLPNIRAFIKAPLEALRDNKGLCGNVTGIEPCPASSSGFGSVYRAELSTGQVVAVKKLHSIPNEEVPNLKTFQSEIQALTEIRHRNIVKLYGFCSHSRHSFLVYEIIERGSIDKILANDEEAVEFDWNRRVNAVKGVANALCYMHHDCSPPIVHRDISAKNVLLDLEHEAHVSDFGASKLLNPNSSNWTSFAGTFGYAAPELAYTMEVNEKCDVYSFGILALEILLGKHPGDAASSSMVMIPSSETLDNKFLLKDKLDHRLPYPTNLIAVEIMQIVKIASACLTENPRSRPTMEQVVKDLVVANASVSTMD 1015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02053 1015 Pfam Leucine rich repeat 643 702 IPR001611 GO:0005515
Aip04g02053 1015 Gene3D Ribonuclease Inhibitor 186 248 IPR032675 -
Aip04g02053 1015 SUPERFAMILY L domain-like 39 310 - -
Aip04g02053 1015 SMART LRR_typ_2 127 151 IPR003591 -
Aip04g02053 1015 SMART LRR_typ_2 617 641 IPR003591 -
Aip04g02053 1015 SMART LRR_typ_2 537 560 IPR003591 -
Aip04g02053 1015 SMART LRR_typ_2 512 536 IPR003591 -
Aip04g02053 1015 SMART LRR_typ_2 272 296 IPR003591 -
Aip04g02053 1015 SMART LRR_typ_2 416 440 IPR003591 -
Aip04g02053 1015 SMART LRR_typ_2 224 248 IPR003591 -
Aip04g02053 1015 SMART LRR_typ_2 368 392 IPR003591 -
Aip04g02053 1015 SMART LRR_typ_2 593 616 IPR003591 -
Aip04g02053 1015 SMART LRR_typ_2 665 688 IPR003591 -
Aip04g02053 1015 PRINTS Leucine-rich repeat signature 539 552 - -
Aip04g02053 1015 PRINTS Leucine-rich repeat signature 665 678 - -
Aip04g02053 1015 Gene3D Phosphorylase Kinase; domain 1 741 809 - -
Aip04g02053 1015 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 17 181 - -
Aip04g02053 1015 SMART LRR_sd22_2 272 298 - -
Aip04g02053 1015 SMART LRR_sd22_2 151 180 - -
Aip04g02053 1015 SMART LRR_sd22_2 536 557 - -
Aip04g02053 1015 SMART LRR_sd22_2 368 394 - -
Aip04g02053 1015 SMART LRR_sd22_2 593 625 - -
Aip04g02053 1015 SMART LRR_sd22_2 248 263 - -
Aip04g02053 1015 SMART LRR_sd22_2 641 673 - -
Aip04g02053 1015 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 298 741 - -
Aip04g02053 1015 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 185 311 - -
Aip04g02053 1015 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 740 1010 - -
Aip04g02053 1015 SUPERFAMILY L domain-like 584 719 - -
Aip04g02053 1015 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 185 311 - -
Aip04g02053 1015 ProSiteProfiles Protein kinase domain profile. 732 1006 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g02053 1015 SUPERFAMILY RNI-like 241 580 - -
Aip04g02053 1015 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 298 741 - -
Aip04g02053 1015 Gene3D Transferase(Phosphotransferase) domain 1 811 1013 - -
Aip04g02053 1015 Gene3D Ribonuclease Inhibitor 414 740 IPR032675 -
Aip04g02053 1015 Pfam Leucine Rich Repeat 538 560 IPR001611 GO:0005515
Aip04g02053 1015 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 740 1010 - -
Aip04g02053 1015 Pfam Protein kinase domain 742 1003 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g02053 1015 Pfam Leucine rich repeat N-terminal domain 38 76 IPR013210 -
Aip04g02053 1015 Gene3D Ribonuclease Inhibitor 249 413 IPR032675 -
Aip04g02053 1015 SUPERFAMILY Protein kinase-like (PK-like) 741 1006 IPR011009 -
Aip04g02053 1015 Gene3D Ribonuclease Inhibitor 37 185 IPR032675 -
Aip04g02053 1015 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 17 181 - -
Aip04g02053 1015 ProSitePatterns Tyrosine protein kinases specific active-site signature. 856 868 IPR008266 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02053 Aip-Chr4 95388309 95392094 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02053 18 904 Receptor kinase-like Gene Family AT4G08850 38.650 0.0 564
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Aip04g02053 Pkinase 1.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02053 - - zju:107421526 933.324