Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aip04g02038 | ATGCCTAATAAGCGCTTTTCCCTCTTTTTTTTTTCGATCGAAAGCAAACTCACAACACTTAGTAAAATTTTCGTTCCCTCCAAAGCTCATCACTCATCATCGCGAAGAACCCTCGCTCATCACCCAGTCATCACTCACCGCCAGTCACCACCCACTACTCAACACATCGTTGCACCGCTCACCAGCTCACCACTCACCAGCTCACACTCTCATCCTCACTCAACACACACACACAAGAGGAAAAAAATCAGAAAAGTGGAGAACAGGAAGAAGAAGAGAAGAAAAGATGAGAGGGAAAGGAAGGAGAGGACGACGCCGGCTAGGGCTCCGCCGCGCAGACCATCGTCGTTGTGTGCGCTGACCGTCGCCTTAGCATCGCCATCTCATGTACTCACTGTCGCCGCTCAGTATCATCATCGCGTGTGCTCACTGTCGCTGCTCAGCATCATCGTTGTCGCTCAGCATCGTCATCGCCGCTCACTTGAGAAGGAAGGCAAAGTCAGTGGAAAGGATACAAAGACTAATGAGACTAAGGCTGCTGTGCTGGCTATGGATGAATCAGTATTAGATGTAGATCAGGTGGAAAATCTCATTAAGTTTTGTCCTACCAAAGAAGAGATGGAACTTTTGAAGGGATACACTGGTGACAAAGAGAATTTGGGAAAATGTGAACAGTATTTTTTAGAGCTGATGAAGGTGCCACGAGTAGAGTCAAAGTTAAGAGTATTCTCTTTCAAGATTCAATTTCTGTCTCAGGTTACAGAATTTAAGAAGAGTTTAAAAGCTGTGAACTCTGCTTGTGAAGAGGAACAGCTAGGGGTTCTAGCTGATAGGTCGCCTGAACTGCTTGACTTCCACTTAGACCTTGTAAGCCTGGAAGCTGCAACTACGGTTGGAAAAAGAAAATTATTCAACTACTAA | 921 | 0.4582 | MPNKRFSLFFFSIESKLTTLSKIFVPSKAHHSSSRRTLAHHPVITHRQSPPTTQHIVAPLTSSPLTSSHSHPHSTHTHKRKKIRKVENRKKKRRKDERERKERTTPARAPPRRPSSLCALTVALASPSHVLTVAAQYHHRVCSLSLLSIIVVAQHRHRRSLEKEGKVSGKDTKTNETKAAVLAMDESVLDVDQVENLIKFCPTKEEMELLKGYTGDKENLGKCEQYFLELMKVPRVESKLRVFSFKIQFLSQVTEFKKSLKAVNSACEEEQLGVLADRSPELLDFHLDLVSLEAATTVGKRKLFNY | 306 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aip04g02038 | 306 | SUPERFAMILY | Formin homology 2 domain (FH2 domain) | 174 | 269 | - | - | |
| Aip04g02038 | 306 | MobiDBLite | consensus disorder prediction | 27 | 114 | - | - | |
| Aip04g02038 | 306 | ProSiteProfiles | Formin homology-2 (FH2) domain profile. | 73 | 306 | IPR015425 | - | |
| Aip04g02038 | 306 | Gene3D | Formin, FH2 domain | 166 | 273 | IPR042201 | - | |
| Aip04g02038 | 306 | PANTHER | FORMIN-LIKE PROTEIN 15A-RELATED | 50 | 269 | - | - | |
| Aip04g02038 | 306 | Pfam | Formin Homology 2 Domain | 174 | 269 | IPR015425 | - | |
| Aip04g02038 | 306 | MobiDBLite | consensus disorder prediction | 46 | 71 | - | - | |
| Aip04g02038 | 306 | MobiDBLite | consensus disorder prediction | 72 | 97 | - | - | |
| Aip04g02038 | 306 | PANTHER | FORMIN-J | 50 | 269 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aip04g02038 | Aip-Chr4 | 94447414 | 94458564 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aip04g02038 | 179 | 269 | FH2 protein (formin) Gene Family | AT5G07740 | 89.011 | 1.61e-49 | 174 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aip04g02038 | - | - | aip:107643586 | 179.489 |