Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02029 ATGCTAAGCATATCCCAGGAAAAATATGACAACACAGTTAAAGAATGCACAAAAGCATTAGATCTGAATCCAGTGTACATTAAAGCTTTAGTAAGAAGAGGAGAAGCTCATGAAAAACTTGAACATTTTGAAGAAGCCATTGCTGATATGAAAAAGATCTTAGAAATTGATCCCTCAAATGATCAAGCTAGGAAGGCCATCAGGCGACTTGAGCCGCTTGCTGCAGAAAAGCGGGAAACGATGAAAAGATGA 252 0.3849 MLSISQEKYDNTVKECTKALDLNPVYIKALVRRGEAHEKLEHFEEAIADMKKILEIDPSNDQARKAIRRLEPLAAEKRETMKR 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02029 83 Pfam Tetratricopeptide repeat 28 60 IPR013105 -
Aip04g02029 83 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 4 82 - -
Aip04g02029 83 Gene3D Tetratricopeptide repeat domain 1 83 IPR011990 GO:0005515
Aip04g02029 83 ProSiteProfiles TPR repeat profile. 27 60 IPR019734 GO:0005515
Aip04g02029 83 SUPERFAMILY TPR-like 4 70 IPR011990 GO:0005515
Aip04g02029 83 SMART tpr_5 27 60 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02029 Aip-Chr4 94053658 94054225 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02029 9 70 Calmodulin-binding Proteins AT3G25230 41.935 3.09e-08 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02029 K24926 - aip:110270710 164.851