Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02020 ATGCTTCAGATTCGGCTTAGTAAGGCTCCTGCCTCAGAAGGGTCGGCAGGGGTTAAGCCCCCACCTGTTGAGACTGTTACCGTCGCTTGCCCTGACCATCTGGTTCTTGCTGATCTACCTGTTGCAAAGGGCATTGGATCAGCTACTGCTGCTTCGCTTGTCAAGACGTTGGGCCGTAGATCACGCCGCCAGCTCGGTGAGCGGGTCCATTTCTGCGTTCGCTGTGATTTTCCAATTGCTATATATGGACGACTGAGCCCTTGTGAGCATGCATTTTGTCTCGATTGTGCTAGAAGTGATTCAATGTGCTACCTGTGTGATGAACGAATCCAAAAGATTCAGACAATCAAAATGATGGAAGGAATCCTCATATGTGCAGCTCCTCATTGTCTCAAGTCTTTCTTGAAGAAGGCTGAATTTGAGTCTCATATCCAAGACAGCCACTCTAACCTCCTTCGACCAAATGCAGATAAAGAAGATGGAAATGAGTCCGAGGTACAGAGTGTTAGGCAATCTACGGCTTCAGATGCTCGAGGTCCACAAAGGCCAGTTTTCTCTCCTGGATCAAATTCGCAGCAGCATGATCCAGAAGACAAAACACGTCGACAGCCACCAAGAGATCAACCACCTTCAAGGGGAAATCTGCAGCCAAAGCCACCATTTTTTGGTCAACAAAATCACCCTTCTGACTCCATGCCAAGCTCTGGTTTAGGGATTCATCAGAGCTTCCATCAACAAAGTTTTGACATGCCACATCCCACCCAAGAACCTTCCCTGTTTGGTGACAGGCAGCAATCAATTGGTCCAGAGACCTCATTTCCTGAGTATCCACCAATGCATTCTGGTCCCAACATGCCTACAATGGTTGCTTCAAACCCAATGATGAACCCTCCTATGCCATTTGGTTATCCCCCTTACCCACAGGATCGTGCTCAACCGTTTTATGGTGCTCCCTATGATATACCTAGGCAGGATTCGGCATCTGATATGGGTGGAGACCAGAGTTCGTTACTGGGTTTCCCACAAGGGGTCCCAGGTGGCCCAAATTTCCCTGGAAATTATCCCCAGCCCTGGCATGCAGGAATTGGTGGTGTGCCTTTTGAACAAGGACCGGGTGGTATGGTTGTGGATCCAAGGGATGCCAAAGGCGTATTGGCACCACAGCCCATGAGCCTCCCGCCGCCACCACCGCCTCCACCCCACATGTCACACATGAAGCAGAATTACTATCCTGGTGATGTTGGGCATGAAGCTCAGGGTTATGGATGGCAACATGATAGTCGTGATAGCTTTGGTGGCCAAGGCTATGTTGCTCTTGTCTTCCATTGCCGCTATGCTACTATTAGTGATAATGAGAAGAGAAAAGGTGGGATGGGTCACATGGCTTGGGATTGTAACCATGGAGGCATGTATGGCAGTGATGGTAAATGCAAATCTGCTACGACTATGGGGATTCTGGAAATTTTGCAATGGACTACCCAATAA 1485 0.4896 MLQIRLSKAPASEGSAGVKPPPVETVTVACPDHLVLADLPVAKGIGSATAASLVKTLGRRSRRQLGERVHFCVRCDFPIAIYGRLSPCEHAFCLDCARSDSMCYLCDERIQKIQTIKMMEGILICAAPHCLKSFLKKAEFESHIQDSHSNLLRPNADKEDGNESEVQSVRQSTASDARGPQRPVFSPGSNSQQHDPEDKTRRQPPRDQPPSRGNLQPKPPFFGQQNHPSDSMPSSGLGIHQSFHQQSFDMPHPTQEPSLFGDRQQSIGPETSFPEYPPMHSGPNMPTMVASNPMMNPPMPFGYPPYPQDRAQPFYGAPYDIPRQDSASDMGGDQSSLLGFPQGVPGGPNFPGNYPQPWHAGIGGVPFEQGPGGMVVDPRDAKGVLAPQPMSLPPPPPPPPHMSHMKQNYYPGDVGHEAQGYGWQHDSRDSFGGQGYVALVFHCRYATISDNEKRKGGMGHMAWDCNHGGMYGSDGKCKSATTMGILEILQWTTQ 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02020 494 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI 1 409 - -
Aip04g02020 494 ProSitePatterns Zinc finger RING-type signature. 88 97 IPR017907 -
Aip04g02020 494 MobiDBLite consensus disorder prediction 166 193 - -
Aip04g02020 494 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED 1 409 IPR040383 GO:0016567|GO:0061630
Aip04g02020 494 MobiDBLite consensus disorder prediction 146 165 - -
Aip04g02020 494 MobiDBLite consensus disorder prediction 218 271 - -
Aip04g02020 494 MobiDBLite consensus disorder prediction 146 281 - -
Aip04g02020 494 CDD RING-HC_HAKAI_like 70 106 IPR040380 -
Aip04g02020 494 ProSitePatterns Zinc finger C2H2 type domain signature. 125 148 IPR013087 -
Aip04g02020 494 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 120 IPR013083 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02020 1 432 C2H2 Transcription Factor Family AT5G01160 43.991 2.19e-105 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02020 K15685 - gmx:100817582 718.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g02020 04 93687591 93692833 Aip04g02020 04 93687591 93692833 ECH