Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g02001 ATGGGTGGAGTTGCTTGGACTGAAGAAGAGGATCACTTGCTTAAGAAATGCATACAACAATATGGTGAAGGCAAATGGCATAGGGTTCCTCTATTGGCTGGTCTAAACAGGTGCCGAAAGAGCTGCAGACTAAGGTGGCTGAACTACCTTCGTCCTAACATAAAAAGAGGAAATTTTGCAGAGGAAGAAGTGGAGATGATTGTTAAACTCCACAAATTATTGGGAAATAGGTGGTCACTGATTGCAGGAAGGCTGCCGGGAAGGACTGCCAACGATGTGAAGAACTATTGGAATTGTCATCTGAGCAAGAAACTGAATGCAATGGAAGGCGAAGAGAGATCACAAGCGACCAAAAATGTTGAAGTGATTAGGCCACAGGCTAGAAACATTGGCACTTCAAGCTCCATGAAGCGAAGAAGGGGAATTCAGGGCGAGTCATCATCCCCGATCGAGAGCGATTTACTTGCTCAACAAGAAATCAGTGGCATGTCGTCCACAATGTCGTTTGATGCCGACGGACAAAGCCATCATAACATGCTAGAATCGCAGCTAGAAAACAACATATACTCATGCTTGGAGCAGCAGGACATTGTTGGTGAGTTGCCTATGGATTTCCGTTTCGAAGGAGGAGTCGAAGAGATCATCAACGCCGGCGAAGGGAGCAGCGGCCAGTGGGATTGGGATGACTTGCTGTTAGACATGGATCTATATAAAGATTTTGCGACTAATTAG 732 0.4577 MGGVAWTEEEDHLLKKCIQQYGEGKWHRVPLLAGLNRCRKSCRLRWLNYLRPNIKRGNFAEEEVEMIVKLHKLLGNRWSLIAGRLPGRTANDVKNYWNCHLSKKLNAMEGEERSQATKNVEVIRPQARNIGTSSSMKRRRGIQGESSSPIESDLLAQQEISGMSSTMSFDADGQSHHNMLESQLENNIYSCLEQQDIVGELPMDFRFEGGVEEIINAGEGSSGQWDWDDLLLDMDLYKDFATN 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g02001 243 SMART sant 55 103 IPR001005 -
Aip04g02001 243 SMART sant 2 52 IPR001005 -
Aip04g02001 243 Gene3D - 4 55 - -
Aip04g02001 243 Gene3D - 58 125 - -
Aip04g02001 243 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 5 239 - -
Aip04g02001 243 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 51 105 IPR017930 -
Aip04g02001 243 ProSiteProfiles Myb-like domain profile. 51 101 IPR001005 -
Aip04g02001 243 PANTHER MYB TRANSCRIPTION FACTOR 5 239 - -
Aip04g02001 243 SUPERFAMILY Homeodomain-like 5 97 IPR009057 -
Aip04g02001 243 Pfam Myb-like DNA-binding domain 5 50 IPR001005 -
Aip04g02001 243 Pfam Myb-like DNA-binding domain 56 98 IPR001005 -
Aip04g02001 243 ProSiteProfiles Myb-like domain profile. 6 50 IPR001005 -
Aip04g02001 243 CDD SANT 58 101 IPR001005 -
Aip04g02001 243 MobiDBLite consensus disorder prediction 125 151 - -
Aip04g02001 243 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 50 IPR017930 -
Aip04g02001 243 CDD SANT 5 50 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g02001 Aip-Chr4 92664037 92668701 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g02001 5 205 MYB Transcription Factor Family AT1G66370 43.556 1.21e-57 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip04g02001 Myb_DNA-binding 1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g02001 K09422 - gmx:100798101 334.724