Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01979 ATGTTGAATCGTCGTGGTGGTGAAGAAGATGAGTTATATGAACAACTATGGGAAGCATGTGCAGGACCCCATGTGGATGTTCCTCGTTCTGGTCAAAGAGTGTTCTATTTTCCACAGGGACATATGGAGCAATTAGAAGAATCAACAAATCAGGAACTAAATCAGAGGATTCCAGTGTTCAAACTTCCCACTAAGATCCTTTGTCGTGTCGTCAACGTCCATTTGCTGGCTGAACAAGAAACGGATGAGGTTTATGCACAGATTACTTTGGTGCCAGAATCTAATCAAGCTGAGCCGACGAGCCCTGATTCGTGCCCCGCCGAGCTTCCAAGGCCACAAAATCACTCCTTTTGCAAGGTCTTAACTGCCTCCGATACCAGCACTCATGGCGGTTTCTCGGTTCTCAGAAAGCATGCCACCGAATGCCTTCCAGCTTTGGACATGTCTCAGCCAACCCCAACTCAGGAATTGGTCGCCAAGGATCTTCATGGTTATGAATGGCGCTTTAAGCATATATTTAGAGGTCAACCACGCAGGCACTTGATCACAACTGGATGGAGTACTTTTGTAGCTTCGAAGAGATTAGTCGCCGGAGACACCTTTGTGTTTCTGAGAGGACACAATGGAGAGTTACGTGTTGGACTGAGGCGTAATACTCCTCAGCCAAGCAGCATGCCTTCATCTGTGATTTCCAGTCAGAGCATGCATCTTGGAGTACTCGCAACTGCATCTCATGCTGTTGCAACTCAGACTCTTTTTGTTGTATATTACAAGCCAAGGAGGAGCCAGTTCATTGTTGGCTTGAACAAGTATTTAGAGGCTATGAACCACAAATTTGCTGTTGCTATGAGATTCAAGATGAGGTTCGAGGGTGAAGATACCCCTGAAAATGAGAGAAGATTTTCTGGGACAATAGTTGGAGTAGAGGATATTTCTCCTTATTGGGTAAATTCGAATTGGAGATCGCTTAAGGTTCTATGGGATGAACCTGCATCTGTTCCAAGACCTGATAGGGTCTCACCTTGGGAAATAGAGCCCCTTATGGCTTCTGTTGTTACTTCTTCACTTCAATCTCCTGTTTTAAAGAATAAAAGGCCTCGACTACCTGGTGAAGTTCATGAACTTGACACAAGATCGGCTGCTTCGACTTTCTGGGATGCTGCGTTGGCACATTCAGATGTAACGCAACTTAGCGTTATTGCTGAAAGCAATATGAGTGATAGTACCCATGTGTGGAATCACAAGCTGATTGACAACAGTAAAGGAAGCTACAATGCTATGTCGAGGATTCAAACCGAAGCAATTCGGGTTTCTTCTCCCCATTCAAGTGGCCCATCTCAATTATTTCTGGACACAACATTTGATGATGGCAAGAGGTTAAACAACAATGATCATTTGCTTGATCAAGTAGACAAGGAGCACAAAATGGAGACGGCTACGAGCTGTCGATTGTTTGGAATCGAGCTTATTGATCATGCCAAGAACTCTCCTGTTGTAGAGAAGGCACCATCCGTAGCGAATGCATCCGGAGTTACCAATGAGGGCTCTGTTAATACCATGTCCCGAACTGATGCAGACCAAAACTCTGATATGGTTAAGACTTCTAACAAAGAGCGAAAGCACGAAGAGCCGCCACAAGTATCCAAAAGAGAAACTCAAAGCAAGCAAATCTGTAGCAGAAGTTGCACTAAGGTTCAAATGCAAGGGGTTGCTGTGGGTCGCGCCATAGACTTGACCATGTTGGAAGGGTATGATCAACTTGTTGAAGAACTGGAGAAGTTGTTTGATATAAAGGGAGAGCTCCAACACAGAAATACGTGGCAAATTGTCTTCACTGATGACGAAGGTGATATGATGCTTGTTGGCGATGATCCATGGCCTGAATTCTGCAATATGGTGAGAAGAATCTTCATCTGTTCCAGCCAGGACGTGAAGAAAATGAGCTCTGTGAGGACCAAAGTACCCCTCTCTTTAACAGAAGAGGAAACTGTAATAAGCTCAGACACAGCTGGGACCTGA 2019 0.4487 MLNRRGGEEDELYEQLWEACAGPHVDVPRSGQRVFYFPQGHMEQLEESTNQELNQRIPVFKLPTKILCRVVNVHLLAEQETDEVYAQITLVPESNQAEPTSPDSCPAELPRPQNHSFCKVLTASDTSTHGGFSVLRKHATECLPALDMSQPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLITTGWSTFVASKRLVAGDTFVFLRGHNGELRVGLRRNTPQPSSMPSSVISSQSMHLGVLATASHAVATQTLFVVYYKPRRSQFIVGLNKYLEAMNHKFAVAMRFKMRFEGEDTPENERRFSGTIVGVEDISPYWVNSNWRSLKVLWDEPASVPRPDRVSPWEIEPLMASVVTSSLQSPVLKNKRPRLPGEVHELDTRSAASTFWDAALAHSDVTQLSVIAESNMSDSTHVWNHKLIDNSKGSYNAMSRIQTEAIRVSSPHSSGPSQLFLDTTFDDGKRLNNNDHLLDQVDKEHKMETATSCRLFGIELIDHAKNSPVVEKAPSVANASGVTNEGSVNTMSRTDADQNSDMVKTSNKERKHEEPPQVSKRETQSKQICSRSCTKVQMQGVAVGRAIDLTMLEGYDQLVEELEKLFDIKGELQHRNTWQIVFTDDEGDMMLVGDDPWPEFCNMVRRIFICSSQDVKKMSSVRTKVPLSLTEEETVISSDTAGT 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01979 672 Gene3D - 556 648 - -
Aip04g01979 672 ProSiteProfiles B3 DNA-binding domain profile. 117 219 IPR003340 GO:0003677
Aip04g01979 672 CDD B3_DNA 115 217 IPR003340 GO:0003677
Aip04g01979 672 Gene3D - 278 352 - -
Aip04g01979 672 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 654 IPR044835 GO:0003677|GO:0006355|GO:0009725
Aip04g01979 672 Pfam AUX/IAA family 536 644 IPR033389 -
Aip04g01979 672 Pfam B3 DNA binding domain 117 218 IPR003340 GO:0003677
Aip04g01979 672 SUPERFAMILY DNA-binding pseudobarrel domain 109 246 IPR015300 -
Aip04g01979 672 MobiDBLite consensus disorder prediction 506 530 - -
Aip04g01979 672 MobiDBLite consensus disorder prediction 531 549 - -
Aip04g01979 672 Pfam Auxin response factor 243 324 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Aip04g01979 672 PANTHER AUXIN RESPONSE FACTOR 6 654 - -
Aip04g01979 672 SUPERFAMILY CAD & PB1 domains 563 636 - -
Aip04g01979 672 ProSiteProfiles PB1 domain profile. 560 641 IPR000270 GO:0005515
Aip04g01979 672 MobiDBLite consensus disorder prediction 501 555 - -
Aip04g01979 672 SMART B3_2 117 219 IPR003340 GO:0003677
Aip04g01979 672 Gene3D - 114 219 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01979 Aip-Chr4 91244970 91254470 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01979 2 648 B3 DNA Binding Superfamily AT4G23980 57.887 0.0 690
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Aip04g01979 AUX_IAA 6.5e-13 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g01979 04 91244970 91254470 Aip02g02031 02 87714665 87719916 PCT