Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01978 ATGCTCTTGGTGAAGACTATTCTATTTGTTGCCAAGGAACTGCTTTTTTTTCCTTTGCAAAGCTGCATGAACCATTCTTGTAGTCCTAATGCCAAAGCCTTCAAGAGAGACGAGGATAGGGATGGCCAAGCAACCATAATCGCAGTAAGGCCGATTCGAAAAGGAGAAGAGGTTGCAACAGGTTTCAGCATGTATGTTGACTGGAGAATGGCTTTGGTAGCTTGGGTTGTGATGCCTTGCCACTTCATAGGCGGTCTCATTCAAGCAAAGTCTGTCAAAGGCTTTTCAGGTGACTATGCTGCTTCCCATTTTGAGCTTGTTGCTCTTGCATCTGAGTCTTCCGCCAATATAAGGACTATAACGTCATTTTGCCATGAAGAACATGTAATCATGGATAATTTGACTTTCTTTCCTGCTTACATCATCATTACTATTCATCTAGGAATTGTTTTGAAAATGGCTCGCTTAATTAAGGATGGTTCTTTAAGAGAGCAGAAGTCTAATGCAGAACCTGTCAGCAAGGCTCCTTCTAAGATCTTTAATTGTTTTGAAAAGGATTTTTATGCAAGAGAAATTGAGGGTGAGGAAACCCAAGATCTGCATCTTGTGGAGGAAAGAGGACTTCACTTTCATGAAAACTTTGATATTGATGAAGAAACTAGATTCTCTTCAGTCGCTAGGGGTAAAGCGTTGAGTGTTATATTCAACCTTGCATCTCACCACTCTCCTACCATTAGTAACAAGGATACCCTCAGCTTCGGTGCAAACTCTACATGCCAGGCTTACACAAAGACTCCGAATTTCTCCTCATGGAACTGCATGCAGTGTTTGCAAGCAGAATGTGCATTTTTTAGCAGCAGTAGTGGTGAAGTTGACGTCTATACATTATCAAGAAAGTGGAAGGAGTTGGTTGATAAGGCCCGAGCCAAGCAGCTCCAACCTCATGAGTACAGCACAGAAGATCATGAATGTCGAGATGTGCATATAAGCCCTCAGGAATGGATAATGCTGGCACAGGCACGACACGTCAGGAATGCACTAAAGGACTATGATGAGGATGAAGATGACACTGAAGACTATAGCTGA 1086 0.4245 MLLVKTILFVAKELLFFPLQSCMNHSCSPNAKAFKRDEDRDGQATIIAVRPIRKGEEVATGFSMYVDWRMALVAWVVMPCHFIGGLIQAKSVKGFSGDYAASHFELVALASESSANIRTITSFCHEEHVIMDNLTFFPAYIIITIHLGIVLKMARLIKDGSLREQKSNAEPVSKAPSKIFNCFEKDFYAREIEGEETQDLHLVEERGLHFHENFDIDEETRFSSVARGKALSVIFNLASHHSPTISNKDTLSFGANSTCQAYTKTPNFSSWNCMQCLQAECAFFSSSSGEVDVYTLSRKWKELVDKARAKQLQPHEYSTEDHECRDVHISPQEWIMLAQARHVRNALKDYDEDEDDTEDYS 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01978 361 PANTHER ATAXIN 2-RELATED 189 239 IPR045117 GO:0003723
Aip04g01978 361 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 58 130 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aip04g01978 361 PANTHER ATAXIN 2-RELATED 147 180 IPR045117 GO:0003723
Aip04g01978 361 Gene3D SET domain 10 59 IPR046341 -
Aip04g01978 361 SUPERFAMILY SET domain 15 80 IPR046341 -
Aip04g01978 361 Gene3D ABC transporter type 1, transmembrane domain 60 150 IPR036640 GO:0005524|GO:0016021
Aip04g01978 361 PANTHER ATAXIN-2 HOMOLOG 147 180 - -
Aip04g01978 361 SUPERFAMILY ABC transporter transmembrane region 59 130 IPR036640 GO:0005524|GO:0016021
Aip04g01978 361 Pfam LsmAD domain 188 227 IPR009604 -
Aip04g01978 361 Pfam ABC transporter transmembrane region 59 129 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aip04g01978 361 Pfam SET domain 17 58 IPR001214 GO:0005515
Aip04g01978 361 PANTHER ATAXIN-2 HOMOLOG 189 239 - -
Aip04g01978 361 ProSiteProfiles SET domain profile. 1 63 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01978 Aip-Chr4 91039395 91042997 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01978 256 319 Acyl Lipid Metabolism Gene Families AT1G34430 46.269 2.54e-11 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Aip04g01978 ABC_membrane 2.6e-08 CL0241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01978 - K05658 mnt:21385446 123.635