Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01977 ATGGGTTTTCCGAAAGAGAGTGATGCCTTGAAGAGAGAATTCCAAGAGTTGAAGCGTAAAATGGAAAGTGCATGGTCCAGGAAAGATGTGGCAGAAGCTCTTCGCATGGAGCAGCTTATTGTAGTGCTTGAAAGGGCTGATTTTATAACCTCAGTGCAAGAGAAAGAAATTAGGTACTTTGAAAAGCGAAATTCTTTGGGCAGGACCCCTTTAGAGCCTCTACATTCATTTTACTGCCCAATCTCTGGAGATATTGTGATGGACCCTGTTGAAACTTTCTCTCGCAACACATTCGAGAGAAGTGCCATACAAAGGTGGTTCTCCCAAGGGAACACTCTCTGTCCATTGACCATGATACCCCTTGACACTCAAATCTTAAGGCCCAATAAGACTCTTCGCCACTCTATTCAAGAGAGGAAGGACATGAATACAATCATCACAATTTCTACCATCAAGTCCTTGTTTGAAACAAATGAACAAGAGCAAGTTCTTGAATCCTCACCACTACCACAACCAGCACAACCACCACCAACACCAACACCAACACCAACACCACAACCACCACCACCACCACCACTAACACCACCACCACAACAACCTCAACCACAACCAAACCACCACCACCAAACAGAAACAGAAACAACACCAAACAGAAACAGAAACAACACCAAACAAAAACAAGAAAGCATAGGCAAGGCAGAGGCGGCGAGGCGGCGAAGCNTTCTAAACATGTAG 735 0.4476 MGFPKESDALKREFQELKRKMESAWSRKDVAEALRMEQLIVVLERADFITSVQEKEIRYFEKRNSLGRTPLEPLHSFYCPISGDIVMDPVETFSRNTFERSAIQRWFSQGNTLCPLTMIPLDTQILRPNKTLRHSIQERKDMNTIITISTIKSLFETNEQEQVLESSPLPQPAQPPPTPTPTPTPQPPPPPPLTPPPQQPQPQPNHHHQTETETTPNRNRNNTKQKQESIGKAEAARRRSXLNM 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01977 244 Pfam U-box domain 77 138 IPR003613 GO:0004842|GO:0016567
Aip04g01977 244 MobiDBLite consensus disorder prediction 204 224 - -
Aip04g01977 244 MobiDBLite consensus disorder prediction 169 203 - -
Aip04g01977 244 ProSiteProfiles U-box domain profile. 72 146 IPR003613 GO:0004842|GO:0016567
Aip04g01977 244 MobiDBLite consensus disorder prediction 157 244 - -
Aip04g01977 244 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 51 152 IPR013083 -
Aip04g01977 244 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 44-LIKE 2 166 - -
Aip04g01977 244 SUPERFAMILY RING/U-box 62 138 - -
Aip04g01977 244 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 166 - -
Aip04g01977 244 SMART Ubox_2 76 139 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01977 Aip-Chr4 91030694 91034996 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01977 71 138 U-box Gene Family AT1G49780 44.000 6.02e-13 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01977 - - adu:107460521 298.13