Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01971 ATGGATCATCAGGGTCAGTGTTTGATGATGTGGACTAAGAGGAAGTACTCTAATAATCTTGTTACTACTATGCCAACAACAAACAACACTCTTGATATTGAAGAATCATGGGAAGAACAAGCTTTTGCAAAAGATGCAGCTGGTTACATATGGCCACCAAGATCATATTCTTGCAGCTTCTGTAGAAGAGAGTTCAGATCGGCTCAAGCTCTTGGTGGGCACATGAACGTTCATAGAAGAGATAGGGCAAGGTTAAAGCAGCAGCAGCAACCATCAAGCCCCATTAATAATGATCAAGAAATTGATGATTATTATGATGTCGAAGTTGAAGCTCATCATCATCATCCAGTTAGTAAGTTCTTCAAAGAGGGACAAACCGTGATTCCGCTTCTTAATTCTTCTATTTTCCATGGGTGCCTTATGAGGAGTAGTAGTAAGAGTATTATTGTTTCCCCTCCTCATCACCATAGTTTGCCTCAAGATTTCAGATTTTTGGAAACTGTATGTGGTGGTGAAGAGAAAAGTGATGATGACATGGGTGTGAGATTAAGCTTGTTTGTTCATAGGGCTAAAGAGGAAGATATAAGTTCTTTCAAGAAGAGGAAAACAGATGATTCAACGATTCTGAAATCAAGTTCAGTAGTTGATGTTAATCATCATCATCATGTTGAATCACTCAACAAGTTTCAATTCAGCCCTAACTTCATTGAAGAGCTGGATCTGGAGCTGAGACTTGGTTATAGCAGCTCCCAGCTCAGAAGTCACCCTTTCAGTAGAGAAGAAAACCCTCCAAGTCCAAAATACGGAGAAAACCCTTTCAGAAAGCCCTGCCTCTTGCACCGTGCGAAGATCGTGAAGCCTCACTGTCACGAAGATCATCGCACCCCAGTTCCCACTAACCACTCAGCGCCACACCATCGTGAACCCTCCTGCACTGATCGTCGTGCGCCGCCCATACCATCGTCGATCTCTGCGCTTCTCGTCGTCCTCTCTGTGCTTATGTCGTCGATTAGAAATTCCCCTCTCTCCCAGTCTCTAGCTAAGAGGTCGCGAGATTCATCAATAAGAAGTCCATTGGGCTCAAGCTCTCTATCCGCCGAGTTGCTGATGCCCGAGGGGCTACTACGCTCACCGCGCACTTGCATCACCACCTGA 1155 0.445 MDHQGQCLMMWTKRKYSNNLVTTMPTTNNTLDIEESWEEQAFAKDAAGYIWPPRSYSCSFCRREFRSAQALGGHMNVHRRDRARLKQQQQPSSPINNDQEIDDYYDVEVEAHHHHPVSKFFKEGQTVIPLLNSSIFHGCLMRSSSKSIIVSPPHHHSLPQDFRFLETVCGGEEKSDDDMGVRLSLFVHRAKEEDISSFKKRKTDDSTILKSSSVVDVNHHHHVESLNKFQFSPNFIEELDLELRLGYSSSQLRSHPFSREENPPSPKYGENPFRKPCLLHRAKIVKPHCHEDHRTPVPTNHSAPHHREPSCTDRRAPPIPSSISALLVVLSVLMSSIRNSPLSQSLAKRSRDSSIRSPLGSSSLSAELLMPEGLLRSPRTCITT 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01971 384 PANTHER OS07G0101800 PROTEIN 10 248 - -
Aip04g01971 384 MobiDBLite consensus disorder prediction 252 272 - -
Aip04g01971 384 Gene3D Classic Zinc Finger 53 116 - -
Aip04g01971 384 MobiDBLite consensus disorder prediction 341 361 - -
Aip04g01971 384 MobiDBLite consensus disorder prediction 290 316 - -
Aip04g01971 384 Pfam C2H2-type zinc finger 56 80 - -
Aip04g01971 384 SUPERFAMILY beta-beta-alpha zinc fingers 53 82 IPR036236 -
Aip04g01971 384 MobiDBLite consensus disorder prediction 290 313 - -
Aip04g01971 384 ProSiteProfiles Zinc finger C2H2 type domain profile. 56 83 IPR013087 -
Aip04g01971 384 SMART c2h2final6 56 78 IPR013087 -
Aip04g01971 384 PANTHER CHAIN A, NMR STRUCTURE OF THE SINGLE QALGGH ZINC FINGER DOMAIN FROM ARABIDOPSIS THALIANA SUPERMAN PROTEIN 10 248 - -
Aip04g01971 384 MobiDBLite consensus disorder prediction 76 99 - -
Aip04g01971 384 ProSitePatterns Zinc finger C2H2 type domain signature. 58 78 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01971 Aip-Chr4 90541760 90548408 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01971 1 246 C2H2 Transcription Factor Family AT5G06070 36.398 1.60e-27 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01971 - - aip:107637911 501.13