Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01970 ATGGGTACATTTTTTACACCAAAGAGAACGCTTTTAAAACCACTCGAGAACCATCGGTCGCCGCCACTCCAGAACCGTAGCTCTTCTTTCACACTCACCACTCCTCTTCCCCACTCGACACTAACCACTCAAGAACCATCGGTTGTCTTCGCTGCGTGCTCACATCGAGAAGACTCTGCAGTCAGCATCGTCCTCCCGTCGCTCACCATCGTGGAGAAGGAATATGAGATTTTAAGCAATCATGGAAGTGCAAAAAATCATAGGTGGAGGAGGTTTGGGCATGTTTACAAAGGGACACTGCCGGACGGAAAGGTGGTCACAGTTAAGAAGGTAAAGGTTGGTAGCAGCCATGGGGATAGGGAATTCAGGGCAGAAGTGGAGATCATCATCCGTGTGCATCACAGGCGTTTGGTATCTTTAGTTGGTTATTACATATGTGGGGATCAAAGATTGCTCGTCTATGAGTATGTTCCTAAGGGGACACTCCATCATCACTTGCATGCAAGTGGAATGCTAGTGTTGACTTGGGACAAGAGGTGCAAGATTGCTATTGGTGCTGCAAAGGGCTTGGCATATCTGCATGAGGAATGTTTGCCGCTTAGGATGAGTTATTTTAGTGTGAAAGTTTACCACCATGGAAGCTTTGGTCTTGAAGGAGGGATTTTGAAGTATTTGGGTGGGGAGACAACTGTGATAGACTACTGTAATGAAGATGAGTGGAGCCTGATTGAGGTTTATAACATAGTGAGCAGACAAGGGTATTTGAAAAAAGATATTGCAGCAATGTGGTACAAATCACTGGATCAAAGTACAGAAGATGGCTTAAGGATGCTGCGAACCGACAAAGATGCAATGGATATGGCTAATATTGGGGTTAGGAAGGATATGGTGGAGCTCAAGACAAGTGGAGGGGATTCTGGCCCAAATGTGGAGGAAGAAAATGTGGGTGAGAAAGATGGAAAAGATGAATCAGATGAGGAAGAAGAGGGTAGTGATGGCAGTGAGGACGAGGACTATACTCCCAAGGGTGGTGTAGATGACAGTAGTGATTCATGGAGTTCTGATTCCAGAAATGGTTATTACTCAGAAGATAGCGCTGCTGAGATTATGTTTGGTGACAGTGATGATGAGAAGGAAGGGGCTGAGGGGTTAGTTGATGTCAACATCAGGGTAGGGGATACATTCGAGGCTGGCACAACTGAAACCCAAACAGATGCAACAAAAGAGAGTAGGAGTGACAATGACAGAGGTAAGGAGAAGATTGTTGCAGGTTTAGGGGATGAGGAAGAAGGATATGAATCTGAAGATTTTCTTGATGTGCCTATTGTTGGTGATGATGAGGATGATAACAATGTTGCCAAGAGGTATCCTTTGCACAAGCAGCTAAAGGACATGAGTGAGTACAAGTGGGAGATTGGAACTCTTTATGTATCAAGAGAGGAGTTTAAGGATTGTGCTACTGCCTATGCTGTACATACTAGGAGGGGTTTGAGGTTTGATAAGGTTGACCTTCAGAGAGTGAAGGTCACTTGCGTGGAGGGTTGCAACTTGTTTGCCTACTATGGGAAGATGAAGAATGGGCAAACATGGCAATTAACCAGCTGCCACAACAAGCATAGTTGTTCTAGGGAGTTGAAAATTGGGATTATGCATGCAAAATGGTTGAGCAAGAGACCACCAGAGTTTGCTTCTGAGAGACCAAAACCTGGTGTGGATTTAAGGCCAAAGTTTCAAAGACTCAATGTGTGCCTTGATGCATGCAAGCAGAGCTTCATGGTTTGCCATCCAATAATTTGCCTTGACGGGTGCTTCATCAAGACACCATATGGAGGTCAGCTTCTCACCGCTATTGGCTGGGACCCGAACGACCAGATGTTGCCAATAGCCTATGCAGTGGTTGAAGCAGAGACGAAGGACACATGGACCTGGTTCCTTACCAATCTGTGTGATGACTTTGGCTATGACAAGATAAGGAGCTGCACCTTCATGTCTGACCAACAGAAGGGCTTAGTTCCAACCTTCGATGAGCTCATTCCCGGAGTGGATCATAGATTCTGTGTTAGACATCTTTACAGAAATTTCAGGAACAGATTCCTAGGGCTGCAACTAAAATTGATGATGTGGAATGCTGTAAAGGCTACTTATTTACAAGAGTGGGAGAGGAGAATGGCTGAAATACAAAGTGTTGATAATGGAGCCTACAACCACCTGATGGAGATACCAACGAAATATTGGTGCCGGCACAAGTTTGGGACTTGGTCTAAGTGTGATACATTGGTAAACAATATGTGTGAGGTATTTAACTCTGTCATTGTGGATGCAAGAGAGAAACCAATAGTCAGCATGCTTGAAGACATCAGAGTATACATAATGAGGCGTTGGGCTGATAATAGGGATCGGATAATTGAATACCCAAGAGAGGTATTGCCCCGTATCAGGATTAAGGTTGAAAAACAAGCTGATGCAAGTGGTAAGTGGGTGAGCACTTATGCTGGTCGTGACAAATATGAGGTAACAAGTATCCAGGGAGGCAAAGAGAAGTTCGTTGTTGATTTGAAGAATCATGAGTGTTCGTGCAGGAAGTTTCAACTATCCGGAATCCCCTGTGCTCATGCAATGACCTGCATCAAGAAGATGTGCTTCAACGTGGACAAATTTGTTGCAAACTGTTACAAGAAAGCAACCTATACTGACTGCTACCAACATGTGGTATATCCCTTGAATGGGCCCAACCTGTGGGAGAAGACACCCTTTGATGACGTTTTGCCACCAATATACAGGAAACCCATTGGAAGGCCTAAACTGAAACGTAATAAAGCTGCAGATGAGAACCCAACTAGGGGAGGGGTGTCTCGCGAAGGGCAGAATCAGAAGTGCTCCTATTGTTTTGCTAGATGTCACAACAAACGGACCTGTCCAAAGAAGCGCAAAGTAGCTGCAACTGCATCGGCAAATAAAGTAGCTGGATCCACAAGAAGAGCTTCCAGAATCATCTCTAGCACTAGCACTATCTCAAGCACTATCTCCAGCCGGGGCTCTAAGCAATCCCAAGCTGCTTCAAAGAAGACCACAGTCACAAGGCCAAAGAGAAAATCATCTGCCACTGATGTGAGTTCACAACACTCTCAAGCTATTTCAAAAAAGGCTAAGTTGACTCCGTCCACCACAAATCTGAGGGTGTTGCCAAGCCCATCGAAGAACATCAGCAAATCCCACTGA 3219 0.4508 MGTFFTPKRTLLKPLENHRSPPLQNRSSSFTLTTPLPHSTLTTQEPSVVFAACSHREDSAVSIVLPSLTIVEKEYEILSNHGSAKNHRWRRFGHVYKGTLPDGKVVTVKKVKVGSSHGDREFRAEVEIIIRVHHRRLVSLVGYYICGDQRLLVYEYVPKGTLHHHLHASGMLVLTWDKRCKIAIGAAKGLAYLHEECLPLRMSYFSVKVYHHGSFGLEGGILKYLGGETTVIDYCNEDEWSLIEVYNIVSRQGYLKKDIAAMWYKSLDQSTEDGLRMLRTDKDAMDMANIGVRKDMVELKTSGGDSGPNVEEENVGEKDGKDESDEEEEGSDGSEDEDYTPKGGVDDSSDSWSSDSRNGYYSEDSAAEIMFGDSDDEKEGAEGLVDVNIRVGDTFEAGTTETQTDATKESRSDNDRGKEKIVAGLGDEEEGYESEDFLDVPIVGDDEDDNNVAKRYPLHKQLKDMSEYKWEIGTLYVSREEFKDCATAYAVHTRRGLRFDKVDLQRVKVTCVEGCNLFAYYGKMKNGQTWQLTSCHNKHSCSRELKIGIMHAKWLSKRPPEFASERPKPGVDLRPKFQRLNVCLDACKQSFMVCHPIICLDGCFIKTPYGGQLLTAIGWDPNDQMLPIAYAVVEAETKDTWTWFLTNLCDDFGYDKIRSCTFMSDQQKGLVPTFDELIPGVDHRFCVRHLYRNFRNRFLGLQLKLMMWNAVKATYLQEWERRMAEIQSVDNGAYNHLMEIPTKYWCRHKFGTWSKCDTLVNNMCEVFNSVIVDAREKPIVSMLEDIRVYIMRRWADNRDRIIEYPREVLPRIRIKVEKQADASGKWVSTYAGRDKYEVTSIQGGKEKFVVDLKNHECSCRKFQLSGIPCAHAMTCIKKMCFNVDKFVANCYKKATYTDCYQHVVYPLNGPNLWEKTPFDDVLPPIYRKPIGRPKLKRNKAADENPTRGGVSREGQNQKCSYCFARCHNKRTCPKKRKVAATASANKVAGSTRRASRIISSTSTISSTISSRGSKQSQAASKKTTVTRPKRKSSATDVSSQHSQAISKKAKLTPSTTNLRVLPSPSKNISKSH 1072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01970 1072 MobiDBLite consensus disorder prediction 346 360 - -
Aip04g01970 1072 SMART 26again6 855 882 IPR006564 GO:0008270
Aip04g01970 1072 Pfam MULE transposase domain 597 693 IPR018289 -
Aip04g01970 1072 MobiDBLite consensus disorder prediction 299 360 - -
Aip04g01970 1072 PANTHER POLYPROTEIN, PUTATIVE-RELATED 594 793 - -
Aip04g01970 1072 MobiDBLite consensus disorder prediction 395 418 - -
Aip04g01970 1072 Gene3D Transferase(Phosphotransferase) domain 1 90 210 - -
Aip04g01970 1072 ProSiteProfiles Zinc finger SWIM-type profile. 848 880 IPR007527 GO:0008270
Aip04g01970 1072 MobiDBLite consensus disorder prediction 318 335 - -
Aip04g01970 1072 Pfam SWIM zinc finger 844 873 IPR007527 GO:0008270
Aip04g01970 1072 MobiDBLite consensus disorder prediction 1000 1072 - -
Aip04g01970 1072 MobiDBLite consensus disorder prediction 1000 1023 - -
Aip04g01970 1072 SUPERFAMILY Protein kinase-like (PK-like) 91 198 IPR011009 -
Aip04g01970 1072 MobiDBLite consensus disorder prediction 929 954 - -
Aip04g01970 1072 PANTHER POLYPROTEIN, PUTATIVE-RELATED 434 557 - -
Aip04g01970 1072 PANTHER - 434 557 - -
Aip04g01970 1072 PANTHER - 594 793 - -
Aip04g01970 1072 ProSiteProfiles Protein kinase domain profile. 81 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g01970 1072 MobiDBLite consensus disorder prediction 1030 1072 - -
Aip04g01970 1072 Pfam Protein tyrosine and serine/threonine kinase 91 196 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01970 Aip-Chr4 90457189 90464930 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01970 92 199 Trihelix Transcription Factor Family AT1G23540 70.370 1.55e-42 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Aip04g01970 PK_Tyr_Ser-Thr 1.2e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01970 - - aip:110265124 833.172