Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01961 ATGGCCAGAAACATGAACCAACAACTCTTCTCTGTGTTACTGTTCATTCTTATCCCAGTTTCATCATCTCAGCCGGATCAGCTTCTCTATTCCGGATTCAAGAACTGTGATGCAACCAACATATCCTTAAACGGCATAGCAGAAATCGAGAAAAACGGTTTGCTAAGATTAACAAACGAAACAAGCAGATTAATGGGTCACGCTTTCTACCCTTCACCATTTCAGATCAAAGACAAAACCAGTGGTAAAGTTCTTTCTTTTTCAACTTCCTTCGCTCTTGCTATTGTTCCTGAGTATCCCAAGCTCGGTGGCCATGGCTTAGCCTTCACCATAGCCACTTCGAAAGATTTCAAAGCTCACCCAAGCCAGTACTTGGGTCTCTTCAACCCAGACGATGTTGGTAACTTAACTAACCATCTTTTTGCTGTTGAGTTTGACACTGTTCAAGACTTTGAGTTCGATGATATAAATGATAACCATGTTGGCATTGATATCAATAGCTTGCAATCCAATGCTTCTGTTAATGCAAGTTACTATCTTGATGATAATGGGTCAGGGAAATTGCAGGATTTGAATCTCAAGAGTGGGAAACCCATCATGGTTTGGGTTGATTATGATTCTGTGAAGAATGTTCTGAGTGTTGCAATGTCTCCAACTTCTTCTAAGCCTAAAAGGGTAACTTTGTCATTTGATGTGGATCTCTCACCCATTTTTCTTGATACTATGTATGTTGGATTCTCTGCTTCAACAGGGTTGCTTGCTAGTTCTCATTATTTATTGGGTTGGAGCTTTAAAATCAATGGTACAGCACCAGTTCTTGATCTTGCTAATCTACCGCAACTTCCAGGTCCAAAGAAGAAGCATAACTCTCTGATAATTGGGATTTCTACTTCGATTTCGGTTTTGGTTTTGTTTGGAGTTGCAATTGGGGTTTACCTCTTCTGGAAGATGAAGAATGCAGATGTAATCGAAGCTTGGGAGCTCGAGATTGGGCCGCATAGGTACTCGTACCAAGAGCTGAAGAAAGCTACCAGAGGATTCAGGGACAAGGAGCTGCTTGGACAGGGTGGATTTGGAAGGGTTTACAAAGGGATATTGCCGAATTCAAAGATACAAGTGGCTGTAAAGAGGATCTCACATGAATCAAAGCAGGGGCTGAGAGAATTTGTATCGGAAATTGCGAGCATAGGCCGACTCAGGCACCGGAACTTGGTTCAATTATTGGGATGGTGCCGGCGCCGCGGAGATCTTTTGCTTGTGTATGATTTTATGGCTAATGGGAGTTTGGATAAGTACTTGTTTGATGAGCCAAAGATTGTCCTGAATTGGGAACAAAGGTTCAAGATCATAAAGGGTGTTGCTTCAGCCCTTTTGTATCTTCATGAGGGCTATGAGCAAGTAGTTATACATAGAGATGTGAAGGCTAGTAATGTGATGCTTGATTCAGAAATGAATGGGAGACTAGGCGATTTCGGGTTAGCGAGATTGTATGAACATGGTGCTAATCCAAGCACAACAAGAGTTGTTGGTACATTGGGGTATTTGGCACCAGAATTGCCTAGAACAGGAAGGGCAACCACAAGCTCCGACGTGTTCGCATTCGGCGCGCTTCTGCTAGAGGTAGCATGCGGGCGCAGGCCTATCGAGCCGAAAGCGTTGCCGGAGGAGTTGGTTCTTGTGGATTGCTTGTGGGAGAAGTTCAAAGAAGGGAGAATACTTGACATGGTGGACCCAAGGTTGAATGGGGATTTTGATGAAAATGAGATTCTTATGGTGCTGAAATTAGGGTTGATATGTTCAAATGATAATCCAAATGCTAGGCCTAACATAAGGCAAGTTATGAGGTATTTGGATGGAGAGGTTGAGTTGCCAGATGAGATGAGAAAGCATATAAGTTCAAATCATGAAGGGTTTGATGAGTTCTTGCATTCACTTGCTTCTTCTTCATTTGATACTGGCTCCTATATTGGAAATAGAGACATGGATAATAGTTTTACTTCTTTTGGTTATTCTCCTCAGTCACTTCCTCAAGCTAGAGGAGAAACAAGGTGA 2052 0.425 MARNMNQQLFSVLLFILIPVSSSQPDQLLYSGFKNCDATNISLNGIAEIEKNGLLRLTNETSRLMGHAFYPSPFQIKDKTSGKVLSFSTSFALAIVPEYPKLGGHGLAFTIATSKDFKAHPSQYLGLFNPDDVGNLTNHLFAVEFDTVQDFEFDDINDNHVGIDINSLQSNASVNASYYLDDNGSGKLQDLNLKSGKPIMVWVDYDSVKNVLSVAMSPTSSKPKRVTLSFDVDLSPIFLDTMYVGFSASTGLLASSHYLLGWSFKINGTAPVLDLANLPQLPGPKKKHNSLIIGISTSISVLVLFGVAIGVYLFWKMKNADVIEAWELEIGPHRYSYQELKKATRGFRDKELLGQGGFGRVYKGILPNSKIQVAVKRISHESKQGLREFVSEIASIGRLRHRNLVQLLGWCRRRGDLLLVYDFMANGSLDKYLFDEPKIVLNWEQRFKIIKGVASALLYLHEGYEQVVIHRDVKASNVMLDSEMNGRLGDFGLARLYEHGANPSTTRVVGTLGYLAPELPRTGRATTSSDVFAFGALLLEVACGRRPIEPKALPEELVLVDCLWEKFKEGRILDMVDPRLNGDFDENEILMVLKLGLICSNDNPNARPNIRQVMRYLDGEVELPDEMRKHISSNHEGFDEFLHSLASSSFDTGSYIGNRDMDNSFTSFGYSPQSLPQARGETR 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01961 683 SMART serkin_6 347 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g01961 683 Gene3D Phosphorylase Kinase; domain 1 332 423 - -
Aip04g01961 683 ProSitePatterns Protein kinases ATP-binding region signature. 353 376 IPR017441 GO:0005524
Aip04g01961 683 SUPERFAMILY Protein kinase-like (PK-like) 329 627 IPR011009 -
Aip04g01961 683 CDD lectin_legume_LecRK_Arcelin_ConA 27 268 IPR001220 GO:0030246
Aip04g01961 683 ProSitePatterns Serine/Threonine protein kinases active-site signature. 468 480 IPR008271 GO:0004672|GO:0006468
Aip04g01961 683 CDD STKc_IRAK 353 619 - -
Aip04g01961 683 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE S.4 9 667 - -
Aip04g01961 683 Pfam Protein kinase domain 348 551 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g01961 683 Gene3D Transferase(Phosphotransferase) domain 1 424 637 - -
Aip04g01961 683 PANTHER - 9 667 - -
Aip04g01961 683 Gene3D - 28 273 - -
Aip04g01961 683 Pfam Legume lectin domain 28 278 IPR001220 GO:0030246
Aip04g01961 683 ProSiteProfiles Protein kinase domain profile. 347 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g01961 683 SUPERFAMILY Concanavalin A-like lectins/glucanases 30 286 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01961 Aip-Chr4 89969295 89971821 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01961 30 625 Receptor kinase-like Gene Family AT3G55550 62.086 0.0 753
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Aip04g01961 Pkinase 6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01961 - - gmx:100784346 1067.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g01961 04 89969295 89971821 Aip04g01961 04 89969295 89971821 ECH