Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01960 ATGCCTTGGATGGAGGAGGTTGGTGTCTTTGCTGTTTGGATGAGAGCTGAGATGCACCGCAGCCGTGGAGAGGGAGAGAAAGTGAAGACTCGAAACGTTGTGGGCTTTCAGCGTGATTCCCGTCGGGAGGTTCTCAACCTAGTGTTAACAGATTTTGGCTTGGCTAAGGAATTCACTGAAAGCGCAAGGTCAAATTCTATGTGCAGAACATTAGAGTATATAGCTCTTGAAATCTTCATAGGGAGGGGTCATGATAAGGTAGCAGATTATTGGAGTGTGGAAATTTTGCTATTTGAAATGCTTACAGAAAAAAATACACTGCGTAAGATAGAGCTTGAATTTCTTTGA 348 0.4339 MPWMEEVGVFAVWMRAEMHRSRGEGEKVKTRNVVGFQRDSRREVLNLVLTDFGLAKEFTESARSNSMCRTLEYIALEIFIGRGHDKVADYWSVEILLFEMLTEKNTLRKIELEFL 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01960 115 PANTHER RIBOSOMAL PROTEIN S6 KINASE 44 108 - -
Aip04g01960 115 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 44 108 - -
Aip04g01960 115 ProSiteProfiles Protein kinase domain profile. 1 115 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g01960 115 SUPERFAMILY Protein kinase-like (PK-like) 28 108 IPR011009 -
Aip04g01960 115 Gene3D Transferase(Phosphotransferase) domain 1 46 105 - -
Aip04g01960 115 Pfam Protein kinase domain 40 108 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01960 Aip-Chr4 89945603 89946642 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01960 46 104 AGC Kinase Gene Family AT3G08720 69.492 2.31e-22 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC-Pl Aip04g01960 Pkinase 2.8e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01960 K04688 - gmx:100804819 91.6633