Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01948 ATGCACTTCAGTGAAGACTACCCTAGCAAGCCTCCGAAGTGTAAATTCCCACAAGGCTTCTTCCACCCTAATGTCTATCCATCTGGAACTGTTTGCTTGTCTATACTTAATGAGGATAGTGGGTGGAGACCAGCTATAACAGTGAAACAGAGGGATATCATCTATTTATCTAGGATGCTACAGAGTATAAAAGAAGGGTTGATAGGAAAAGTTGCTGCAGATCAGAGTCACAAATGGATATACAAAGAGCCTAATGAACAAGAAATCAACTTCTTGTCAGCGTGGCATAATTCAACTGATTCACATCCTAGGACTTGGGAAGCACAGTTCCAATCTCGACTAAAGACCATAGCTCTCATTGCTGTAAGAGAAGGTGTTGTTCAATTGGGAGCAATTCACAAGGTGATTGAGGACTTGAGCTATGTGGTTCTACTGAGGAAGAAATTCAGCTACACAGAAAGTAACATAAATTAA 474 0.4072 MHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQRDIIYLSRMLQSIKEGLIGKVAADQSHKWIYKEPNEQEINFLSAWHNSTDSHPRTWEAQFQSRLKTIALIAVREGVVQLGAIHKVIEDLSYVVLLRKKFSYTESNIN 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01948 157 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK (WITH NO LYSINE)-LIKE PROTEIN 62 154 - -
Aip04g01948 157 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 97 IPR000608 -
Aip04g01948 157 Pfam Ubiquitin-conjugating enzyme 1 51 IPR000608 -
Aip04g01948 157 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 48 149 IPR025610 -
Aip04g01948 157 PANTHER TRANSCRIPTION FACTOR MYC/MYB-RELATED 62 154 - -
Aip04g01948 157 Gene3D Ubiquitin Conjugating Enzyme 1 118 IPR016135 -
Aip04g01948 157 SUPERFAMILY UBC-like 1 51 IPR016135 -
Aip04g01948 157 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 21 36 IPR023313 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01948 Aip-Chr4 89418421 89419670 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01948 53 149 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31280 35.714 8.59e-12 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01948 - - mnt:21410420 174.481