Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01941 ATGAGAAGTGAGAACCGCACACCAATCTTTTCCTTCTTCTGCTTCTCGATTTCGCTCTCGCTCTCGCTCTCGCACTCGCTCTCACTCTCCATCATTCCAGACAAGGTTGTGCTGATTTTGATTGAACTCAATCGCGCTCTAGTAATCAGGTTGAACTCATATTGGTCTCACAATAGTCACCGTCGCTCTGGATCTGGTTCCCATAACAAAACACGGGTTTCTGATAATGAAAGTTCTGATAGCAATAATGGCTTGACCACAGGGGCTATTATAGGCATTATTATAGGTTCAATATTGGTGGCTGTTATTTTGATACTTGCTCTTTTCTTCTGTGTCCGAAAGCAAAAAGGGAAGGAAAAGGTTACAAAAACTTCTAGTGGGAGCCTTCCTCATGGAACTACTAATAAGGAAGGGAGCTGGTTCCACATCAGAAAAACCTCGTTGATTTTGTATTCAACCAACCTCAAAATCACCTCAAGATTACATATATTATGTGTGATGTTGGTAAGTTTTGTGGTGTGGAGTCAGTTTGTTTGTTTGTATGGTGGAACCTCCAAAGGGCCACAAATCTCATCACTGAAATCTGGCATCGACATTGTCATTGGAACTCCTGGTTGTATACAGGATTTGATTGAAATGGGTGTCTGCAGCCTAAAAGATGTATCTTTTGTGGTGCTTGATGAAGCAGATCGGATGCTTGACATGAGTTTCGAACAAGTAGTCCGCTCTATGCTTGATCGGATGCACTAG 750 0.4227 MRSENRTPIFSFFCFSISLSLSLSHSLSLSIIPDKVVLILIELNRALVIRLNSYWSHNSHRRSGSGSHNKTRVSDNESSDSNNGLTTGAIIGIIIGSILVAVILILALFFCVRKQKGKEKVTKTSSGSLPHGTTNKEGSWFHIRKTSLILYSTNLKITSRLHILCVMLVSFVVWSQFVCLYGGTSKGPQISSLKSGIDIVIGTPGCIQDLIEMGVCSLKDVSFVVLDEADRMLDMSFEQVVRSMLDRMH 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01941 249 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 177 247 - -
Aip04g01941 249 Gene3D - 116 249 IPR027417 -
Aip04g01941 249 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 249 IPR027417 -
Aip04g01941 249 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 225 233 IPR000629 -
Aip04g01941 249 MobiDBLite consensus disorder prediction 58 81 - -
Aip04g01941 249 Pfam DEAD/DEAH box helicase 177 248 IPR011545 GO:0003676|GO:0005524
Aip04g01941 249 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 177 249 IPR014001 -
Aip04g01941 249 PANTHER BNAA08G07020D PROTEIN 177 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01941 Aip-Chr4 88027121 88029474 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01941 61 130 Strubbelig Receptor Gene Family AT4G22130 40.845 2.00e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01941 K14811 - aip:107639402 404.06