Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01939 ATGTGGAAGATTGCAGAGAAATATATAGAAGCTCCTGTCAATAATGCAGTAATTACTGTCCCTGCTTATTTCACTAACTCTCAACATAAAGCCACGAAAGTTTTCGGTGCCATTGCAGGCCTCAGTGTCATGAGAATTATCAATGAGCCTACAACTGCTGTAATTGCATATGGCCTGAACAAGCTAGCTGATTGTAATGGAGAACGAAACATTTTCATCTTTGACCTCGGTGGTGGTACTTTTTATGTGTCTCTGCTTACAATTAAAGATAAAGTCTTTGAAGTTAAGGCCACAACAGGGAACATTCATCTTGGTGGAGAAGACTTCGATAACAGAATGGTGAATCACTTCGTACAAGAATTCAAAGGGAAGAATAATGTGGATATTAGTGGGAACTCAAGAACCTTAAGAAGCCGTGCCAAGTTTGAGGAACTAAACATGGAACTCTTTAGAAATTGTATGGAAACAGTAGATAAGTGTCTCACTGATGCTAAGATAGACAGGTCTTGTACACATGATGTTGTTCATGTTGGCAGCTCATCTAGGATTCCCAAAGTGCAGCAGCTATTGCAAGAATTCTTCAGAGGTAAGGATCTTTGCAAGAGTATCAACTCGGATGAAGCTGTTGCTTATGGAGCAGCAATTGTGGCTACTTTATTGACTGAAGACATCAAGCGAGCTCTAGAAATGGTTCTATTAGATGTTACACCCCTATCACTTGGTATAAAGACATTTGGAGACCTCATAGGAATAGCGATTCCTAGGAATACTACCATACCTGCAAAGAGAACAAAAAGATATTGTACAGCTAAAGATAACTATACCATTGTTCTGATAGCTGTTTATGAGGGTGAGAGGACAAGAGCCAGAGATAACAACTTGCTTGATTGGTTTAATCTTTCTGGTCTTTCTCATGCTCCTCGTGGCCATCCTTTATATGTATGCTTTGATATAGATGCTGATGGTATCCTAAATGTGTCTGCTTGGGAAGAAACCAATCGTTGTATCATTGATAATGTCAAGAAGTTTTAG 1032 0.3924 MWKIAEKYIEAPVNNAVITVPAYFTNSQHKATKVFGAIAGLSVMRIINEPTTAVIAYGLNKLADCNGERNIFIFDLGGGTFYVSLLTIKDKVFEVKATTGNIHLGGEDFDNRMVNHFVQEFKGKNNVDISGNSRTLRSRAKFEELNMELFRNCMETVDKCLTDAKIDRSCTHDVVHVGSSSRIPKVQQLLQEFFRGKDLCKSINSDEAVAYGAAIVATLLTEDIKRALEMVLLDVTPLSLGIKTFGDLIGIAIPRNTTIPAKRTKRYCTAKDNYTIVLIAVYEGERTRARDNNLLDWFNLSGLSHAPRGHPLYVCFDIDADGILNVSAWEETNRCIIDNVKKF 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01939 343 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 229 334 IPR029047 -
Aip04g01939 343 Gene3D - 201 217 - -
Aip04g01939 343 Gene3D - 2 61 - -
Aip04g01939 343 Gene3D Actin; Chain A, domain 4 138 152 - -
Aip04g01939 343 Pfam Hsp70 protein 2 136 IPR013126 GO:0005524|GO:0140662
Aip04g01939 343 Pfam Hsp70 protein 138 332 IPR013126 GO:0005524|GO:0140662
Aip04g01939 343 SUPERFAMILY Actin-like ATPase domain 1 60 IPR043129 -
Aip04g01939 343 PRINTS 70kDa heat shock protein signature 16 36 - -
Aip04g01939 343 PRINTS 70kDa heat shock protein signature 229 248 - -
Aip04g01939 343 PRINTS 70kDa heat shock protein signature 309 325 - -
Aip04g01939 343 PANTHER HEAT SHOCK PROTEIN 70KDA 1 137 IPR013126 GO:0005524|GO:0140662
Aip04g01939 343 PANTHER HEAT SHOCK 70 KDA PROTEIN 1 137 - -
Aip04g01939 343 Gene3D - 153 200 - -
Aip04g01939 343 Gene3D Actin; Chain A, domain 4 105 137 - -
Aip04g01939 343 PANTHER HEAT SHOCK PROTEIN 70KDA 138 333 IPR013126 GO:0005524|GO:0140662
Aip04g01939 343 PANTHER HEAT SHOCK 70 KDA PROTEIN 138 333 - -
Aip04g01939 343 ProSitePatterns Heat shock hsp70 proteins family signature 2. 73 86 IPR018181 -
Aip04g01939 343 Gene3D - 67 104 - -
Aip04g01939 343 SUPERFAMILY Actin-like ATPase domain 66 220 IPR043129 -
Aip04g01939 343 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 222 342 IPR029047 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01939 Aip-Chr4 87708028 87709166 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01939 1 341 Calmodulin-binding Proteins AT3G12580 58.486 5.43e-150 435
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01939 K03283 - egr:104423239 414.846