Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01934 ATGAAACAACATAAAATTACTACGCTAATAGCCACAATTGCAGCACTATTGCTGTCATGCACTGCCACGCGCCAGTGTGTCAATTGTGGCCCACACCCAGTTCCATATCCGTTAAGCACCGGACCGGACTGCGGTGACCCGAGTTATAAAATCCGGTGCATCGGAGGCATATTGTGGTTCGATGCACTTGCCGGGTCATCCTACATGATCAAGTCCATCAACCCGACAACCCGCCATATCATAATCCAACCTGCCACACTGGATAGAAGCGCGTGTGTATCGACGGACTTCCATTGTGAAGGCATTCGCCTCAATGAAACCCTTCCTTTTGCCATTGCCACCGGCAACACTATCATTTTGTTGAATTGTACCATCAACGCGCCTCACGCACCGCCACTCGACTGCTCCGCAAGTAGCCCGTGCCACAGTTACATTAAGGACCATAAAGATGCCTACGCGTGCGAGCGCGTGCCAACTTGTTGTGCCTACAAAACCGGTGGGCCCCACAAGGAGTACGAGGTTCGAGTTCGCGGTAGTGGTGGTTGTGCGGCGTATCAGAGTTTTGTGGACTTTAACGGTGTGTCAGGGACACCAGGGAAGGGGTGGCCGGAGTTAGGGGTTGCAATTGAGTGGGTGGCACCACAGGAACCGGTTTGTAAGGGGCCAATGGATTGCAATGCATTGTTGAATTCCAAGTGTGGAGTGGGTCCCACAAGTGGTGGGGTGCAAAGGTGCTTGTGCATTGCTGGCTTCAAGTGGGATCCTGCTAGTGGGTTATGTCAAGGTCTAGGAGGTCGAGGTCAAGCTCAAACTCAAGTTCAGAGTCAAATTTCAACTGTGGCTGCTTCCTTAGGTGGAATAATCACCATTGCAGTAGTAATTGGAGCCCTTTTATACAAGAAGCAAATTGAAATGAAGAAAAAAGCAAAGAGAACCATGAACAAAAAGAAGAAAGAAATAATCACAAGTGCCAAAGCAACTCCATTGTCATCAAGGATCTTCACGGGCAGAGAGATCAGGAAAGCAACCAACAACTTCGCGGAAGAAAACCTCATCGGCTCTGGTGGCTTCGGCGAAGTGTTCAAAGGCACCTTTGATGACGGATCCATAACTGCCATCAAGCGTGCCAAGCTTGGAAGCACAAAAGGCATTGATCAAATCCAAAATGAAGTTAGGGTACTCTGCCAAGTTAACCATAGAAGCCTAGTGAGACTCCTTGGTTGTTGCTTGGAGCTAGAGCACCCTTTACTAATTTATGAGTATGTTTCTAATGGGACACTCTTTGATTACCTCCATCGTCTCCCTTTGGTCGGAGTAGGCGAAAGGCAACCACTTAAATGGCACACAAGACTAAAAATCGCACACCAAACAGCCGAAGGACTTTCATATCTTCACTCTGCGGCCGTGCCCCCAATCTACCACCGAGATGTAAAATCTAGCAATATTCTTCTTGATGACAAGTTTGATGCCAAGGTTTCTGATTTCGGCTTGTCTAGGCTTGTTGAATTAGCTGAAGAAAACAAGAGTCATATCTTTACAAGCGCGCAGGGGACTCTTGGATACCTGGATCCGGAATACTACCGAAACTTTCAACTGACCGATAAGAGTGATGTTTATAGCTTTGGAGTTGTGTTAATGGAGCTACTCACTGCTCAGAGGGCTATTGACTTTAACAGGGAGGAAGAGAATGTGAACTTGGCAGTGTATGCTAAGAAGAAAATAGTTGAGGACAGGCTTATGGAGGTTCTTGATCCGTTGCTTAAAGATGGATCTAGCAATGTGGAACTGGAAACTATGAAATCTTTGGGTTATCTTGCAGCTTCATGCTTGGATGATCAGAGGCAAAAAAGGCCTTCCATGAAAGAGGTTTCTGATGAAATTGAATACCTTATTAATGTTGTTAAGGGTCAAGGTTTCAAATCCAAATTATAG 1932 0.4658 MKQHKITTLIATIAALLLSCTATRQCVNCGPHPVPYPLSTGPDCGDPSYKIRCIGGILWFDALAGSSYMIKSINPTTRHIIIQPATLDRSACVSTDFHCEGIRLNETLPFAIATGNTIILLNCTINAPHAPPLDCSASSPCHSYIKDHKDAYACERVPTCCAYKTGGPHKEYEVRVRGSGGCAAYQSFVDFNGVSGTPGKGWPELGVAIEWVAPQEPVCKGPMDCNALLNSKCGVGPTSGGVQRCLCIAGFKWDPASGLCQGLGGRGQAQTQVQSQISTVAASLGGIITIAVVIGALLYKKQIEMKKKAKRTMNKKKKEIITSAKATPLSSRIFTGREIRKATNNFAEENLIGSGGFGEVFKGTFDDGSITAIKRAKLGSTKGIDQIQNEVRVLCQVNHRSLVRLLGCCLELEHPLLIYEYVSNGTLFDYLHRLPLVGVGERQPLKWHTRLKIAHQTAEGLSYLHSAAVPPIYHRDVKSSNILLDDKFDAKVSDFGLSRLVELAEENKSHIFTSAQGTLGYLDPEYYRNFQLTDKSDVYSFGVVLMELLTAQRAIDFNREEENVNLAVYAKKKIVEDRLMEVLDPLLKDGSSNVELETMKSLGYLAASCLDDQRQKRPSMKEVSDEIEYLINVVKGQGFKSKL 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01934 643 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 20 15 636 - -
Aip04g01934 643 Gene3D Transferase(Phosphotransferase) domain 1 422 637 - -
Aip04g01934 643 CDD STKc_IRAK 352 628 - -
Aip04g01934 643 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 15 636 IPR045274 GO:0007166
Aip04g01934 643 ProSitePatterns Protein kinases ATP-binding region signature. 352 374 IPR017441 GO:0005524
Aip04g01934 643 Gene3D Phosphorylase Kinase; domain 1 303 421 - -
Aip04g01934 643 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Aip04g01934 643 ProSiteProfiles Protein kinase domain profile. 346 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g01934 643 SMART serkin_6 346 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g01934 643 SUPERFAMILY Protein kinase-like (PK-like) 327 625 IPR011009 -
Aip04g01934 643 Pfam Protein kinase domain 347 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g01934 643 ProSitePatterns Serine/Threonine protein kinases active-site signature. 472 484 IPR008271 GO:0004672|GO:0006468
Aip04g01934 643 Coils Coil 299 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01934 Aip-Chr4 87572731 87580806 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01934 25 634 Receptor kinase-like Gene Family AT5G02070 55.987 0.0 694
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Aip04g01934 Pkinase 6.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01934 - - ahf:112794981 1100.5