Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01862 ATGTCAACATTGCAGATGTCCCATGTTATTGATTTAGAGCAAGGAAATCATGAAGATGATGCTGTTGTTGGAGGTGTTGGGAGTGATGATGATGATGGTAGCGTGTATTTATCTGATGCAGAAGAGGGTGGTTCAAGCCACTCTCATTTCTATTCAACACATGGTGATGGTGGCTCAGCATTTGATGATTGCAGCTTCTCATGTGTCTCTGATCTTGAAGCTGCTGCTGTTGTTCATGATTCTGGGAGGGCTTCTTTTGCTTCTGATTTCTCTGTGGAGCTGGGAAATGCAGCTGGGGTTCCTGAAATCAAAGTGCATTTGGATAATAATATTATTAATAATAATAATAATAATCACAAAGTGGAGAGGGATTGTAGAATTTGTCACATGGGTTTGGAGAGTGATAGTTCTGAGTCTGGTGTTCCAATTGAATTGGGTTGTGCTTGTAAAGATGATCTTGCTGCTGCTCACAAAATATGTGCTGAGACATGGTTCAAGATTAAGGGGAATTTGTGA 516 0.405 MSTLQMSHVIDLEQGNHEDDAVVGGVGSDDDDGSVYLSDAEEGGSSHSHFYSTHGDGGSAFDDCSFSCVSDLEAAAVVHDSGRASFASDFSVELGNAAGVPEIKVHLDNNIINNNNNNHKVERDCRICHMGLESDSSESGVPIELGCACKDDLAAAHKICAETWFKIKGNL 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01862 171 PANTHER ZINC FINGER, RING-CH-TYPE 5 170 - -
Aip04g01862 171 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 171 IPR013083 -
Aip04g01862 171 ProSiteProfiles Zinc finger RING-CH-type profile. 117 171 IPR011016 GO:0008270
Aip04g01862 171 SUPERFAMILY RING/U-box 121 170 - -
Aip04g01862 171 Pfam RING-variant domain 125 167 IPR011016 GO:0008270
Aip04g01862 171 SMART ringv_2 124 171 IPR011016 GO:0008270
Aip04g01862 171 PANTHER OS01G0850200 PROTEIN 5 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01862 Aip-Chr4 83410651 83411218 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01862 77 170 C3H Transcription Factor Family AT5G05830 58.511 2.09e-28 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01862 - - aip:107637846 330.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g01862 04 83410651 83411218 Aip07g00926 07 11205539 11209026 ECH
Aip04g01862 04 83410651 83411218 Aip04g01862 04 83410651 83411218 ECH