Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01857 ATGAAGATGATGGTTGATTTGATGTTTGAGAGAATGAGTGGAGTGGTTGATGTTATCATCCCTGGATATGAGGAAGATTTCAATTGTAAGATCGTTCCTCCACGTGAGGCCTGGAGGATCAAAGTTAGGATACTAAGGGCTTGGACTGTACCTAGCTTTGGTAATGCAGATGTTCCAAATTCAATGGAACTTATTCTGGTTGATGAAAATTCTACCAAAATCCAGGCCACTATAAGGAAGCAACTAATCCACAAGTTTAAAGATCATCTTCTTGAAGGCAGTTGTTATAAGATGAGCTATTTTGCTGTTGTTTCAAACCAAGGTTCTTATAGAGCTACAAAGCATGAGTTCAAACTCATTTTTCTGTTTCGTACAACAGTGACAACAATTCCTGATGATATAATACCCAAGTCTTGTTTTTCTATATATCCCTTTGAAGACATATTGCAAATGAGTCAGGATCATGACTATTTAGTTGATGTAATTGGTCTTTTGACATTGGTTGGGGAAGAGAAAAACTATGACAGGGATGGTAAAACGGTTAAGATGGTGGTTGTCGAACTTTCTTCACAAAAGATGATGCTGCGATGCACATTATTTGGAGAGTACGTGGACCAGTTAAATGATTTTCTTGCTTCTGGTTATGTTGAGCAACCGGTTGTCATTGTTCAACTTGCTAAGATTAAACTTTTTCGAGGTCAACCTAGTCTCCAGAATGTTATGAAAGCAACAAAAATTTACTTTAATCCTGATTTGTCAGAAGTTATTGATTTTCGAAAAAGCATGGTCGAACAAGGGATTAATGGCACTCAACCTTTATTCATTGCGAATGAGGGAAAATCTGTTTCATTGGAGGATGACTTCATGCGCTTAACTAGGCGATCCACAATAGATCAATTACATGATAACAAAGAGGATGGGAGTTTTGTTATTATGGGTACTATCACTGATATTGTTGAAGAGGGTTGTTGGTGGTATTCCACTTGTGTGTGTGAAAAGGCAGTTTATCCTGAGTCTGGGGTCTATTTCTGTGATGTTTGCATGCATCATGTGACAAATGTGATTCCAAGGTTCAGACTTAAAGTAGCAGTTTCTGATCATACTGGACAGGGCATATTCGTTTTGTTCGATCGTGAAATAGCTTATTTGCTTAAAAAAGCATGTGCTGACCTTTTTAATGAAGTCCAAAAGGAGCCAACTGTTCTGTGTGGAGATAGCTATCCTATTACATTTAAAACTTTAGAGGGTAAAAAAGTTTTACTAAAAGTAGATACCAAGTCCCTTGGTATAGACAAATACTTTGGAACCTTTCGTGTAAAAAGGATTTGTGATGACCCAACTATTATTTCTATGTTTGAGCTTGCTGAGAATGAGAACGAAGTGACACCTGTCAAGGATGCATGTGTTCCTGGGATTGGTTTGGACATAGGTGAACCCTCTTATACACAGCCTACCTCAAAAGATGTTAAGCTTTCAGTCTTGGATAAGGATGAAAGTGTTCCTGGTCTTGATGACATTTCGATAGATATGGACACTAATAGGAAATCTGTTGTTCCTCAAGTTTCTGGCGATGATGATGAGAATCAGGTCTTTAGTGATGAAGTTGGCTCATTGCTCAACTCAGGTGTTGAAGAAACTCAGGACTTCCTATCTCATCTTCTGGATAATTCGGACAACATTGATGTTTCTTCTATTTGCAATGATGGTGTGCGTTCCAAAGTGAAGAGAAACCTTGAATCAGATTTTCGGAAAGCCTTGGAGGAAACTGTTGGTCCTTCATCAAAGATGATCAAGGTTGAAGATAATTAG 1809 0.3809 MKMMVDLMFERMSGVVDVIIPGYEEDFNCKIVPPREAWRIKVRILRAWTVPSFGNADVPNSMELILVDENSTKIQATIRKQLIHKFKDHLLEGSCYKMSYFAVVSNQGSYRATKHEFKLIFLFRTTVTTIPDDIIPKSCFSIYPFEDILQMSQDHDYLVDVIGLLTLVGEEKNYDRDGKTVKMVVVELSSQKMMLRCTLFGEYVDQLNDFLASGYVEQPVVIVQLAKIKLFRGQPSLQNVMKATKIYFNPDLSEVIDFRKSMVEQGINGTQPLFIANEGKSVSLEDDFMRLTRRSTIDQLHDNKEDGSFVIMGTITDIVEEGCWWYSTCVCEKAVYPESGVYFCDVCMHHVTNVIPRFRLKVAVSDHTGQGIFVLFDREIAYLLKKACADLFNEVQKEPTVLCGDSYPITFKTLEGKKVLLKVDTKSLGIDKYFGTFRVKRICDDPTIISMFELAENENEVTPVKDACVPGIGLDIGEPSYTQPTSKDVKLSVLDKDESVPGLDDISIDMDTNRKSVVPQVSGDDDENQVFSDEVGSLLNSGVEETQDFLSHLLDNSDNIDVSSICNDGVRSKVKRNLESDFRKALEETVGPSSKMIKVEDN 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01857 602 SUPERFAMILY Nucleic acid-binding proteins 140 262 IPR012340 -
Aip04g01857 602 CDD RPA1_DBD_A_like 39 127 - -
Aip04g01857 602 Pfam Domain of unknown function DUF223 63 158 IPR003871 -
Aip04g01857 602 PANTHER REPLICATION FACTOR A 1, RFA1 40 392 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aip04g01857 602 SUPERFAMILY Nucleic acid-binding proteins 31 133 IPR012340 -
Aip04g01857 602 Gene3D - 283 447 IPR012340 -
Aip04g01857 602 Gene3D - 29 132 IPR012340 -
Aip04g01857 602 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 40 392 - -
Aip04g01857 602 CDD RPA1_DBD_C 299 426 IPR013955 -
Aip04g01857 602 SUPERFAMILY Nucleic acid-binding proteins 292 445 IPR012340 -
Aip04g01857 602 CDD RPA1_DBD_B_like 160 262 - -
Aip04g01857 602 Gene3D - 134 270 IPR012340 -
Aip04g01857 602 Pfam Replication factor-A C terminal domain 310 399 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01857 Aip-Chr4 83210196 83213384 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01857 33 369 Core DNA Replication Machinery Family AT2G06510 23.481 2.31e-16 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01857 - - ahf:112711209 1159.05