Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01843 ATGAACTTTGTTGTGATAGTTCAATATAAACCTCATGTGGAGCACAATGCAAGAATGTTCCAAGCTCCATTCCGCGAATCTTGGCTAGCCGGCCAATATAACTGCTATGCAGGTTTTGCCTCGTGCGATCTTTATCCACACGTGCATCAGCATGGACCTTACATTGAATCTGAGCTCATTTCCTTTCTTGGGTCAGCTGGATCACTCTTTGACTTGACACTTCCTCTCTTTAGGGGCAACGACACGCGCACCAACTTCGTGATTCATCTCCGTGAAGCTTTGAACAACGAACAGCAAGTCAAAGTGTTCATAGATGAGGATCTCCCAAAGGGGCAAAGCATAGGGCCTTCACTCTCAAaggctattgaaagttcacatATTGACGAAGAGCTTCTTCAGGAAGTGGTTAATATGGGATTTGACAGAAATCAATTGGTTGAATCTTTATGCAACAGGATCCAAAATGAGATGGGGCTGGTGATGATTTGTTTAAAGGGCTATGGAGGCTGTGCAGGGCCATTAATGGATGTTCCTTGTGTTCAAGACAGAGTTTTCTATTTCCCTCAGAGTCACATTGAATTGGTATGA 588 0.4252 MNFVVIVQYKPHVEHNARMFQAPFRESWLAGQYNCYAGFASCDLYPHVHQHGPYIESELISFLGSAGSLFDLTLPLFRGNDTRTNFVIHLREALNNEQQVKVFIDEDLPKGQSIGPSLSKAIESSHIDEELLQEVVNMGFDRNQLVESLCNRIQNEMGLVMICLKGYGGCAGPLMDVPCVQDRVFYFPQSHIELV 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01843 195 Gene3D - 75 128 IPR035897 -
Aip04g01843 195 SUPERFAMILY Toll/Interleukin receptor TIR domain 76 127 IPR035897 -
Aip04g01843 195 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 126 149 IPR015940 -
Aip04g01843 195 Pfam TIR domain 77 127 IPR000157 GO:0007165
Aip04g01843 195 CDD UBA_SnRK1_plant 127 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01843 Aip-Chr4 82258738 82261802 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01843 170 193 B3 DNA Binding Superfamily AT4G23980 70.833 7.63e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01843 K07198 - ahf:114925841 137.887