Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01840 ATGTCTCAGCTTAGCTACAATGAACTAAGAGCCGCCACAAAGAATTTCCGGCCAGATAGTGTCTTAGGCGAGGGAGGGTTTGGTTCAGTTTTTAAGGGATGGATTGATGAGCATTCACTTGCTGCTACAAAACCAGGCATAGGAATGATCGTTGCCGTGAAGAGGCTTAACCTAGATGGGCTCCAGGGTCACAAGGAATGGTTGGCTGAAATCAACTATCTGGGGCAACTTCAGCATCCTAATCTTGTCAAGTTGATAGGATACTGCTTGGAGGATGACCACCGGCTTCTGGTTTATGAATTTATGCCTAAGGGTAGCGTCGAGAATCATCTGTTCAGAAGAGGTTCCTATTTCCAGCCATTCTCTTGGAATTTGCGAATGAAAATTGCTCTTGGGGCTGCACGAGGTCTTGCTTTTCTTCATAGTCCTGAAGTTCAAGTCATATACCGCGACTTTAAGACTGCAAACATCCTCCTTGATACTAATTACAATGCCAAACTTTCTGATTTTGGGTTGGCCAGAGATGGTCCAACAGGTGATAGAAGCCATGTCTCTACTCGGGTCATGGGAACACGGGGATATGCGGCGCCAGAGTATCTAGCAACAGGTCACCTCACCTCTAAGAGTGATGTGTATAGTTTTGGAGTAGTTCTTCTCGAAATGATATCGGGGAGAAAAGCAATAGACAAGAACCAACCAACTGGAGAGCACAACTTAGTTGAATGGGCCAAGCCTTATCTGTCTAATAAACGCAGAGTTTTTCGTGTAATGGATCCTCGTCTTGAAGGCCAATATTCCCAGAGTCGAGCACAGGCAGCAGCCGCCCTTGCAATGCAATGTCTTGCGGTTGAGCCTAAGGCCAGGCCGAATATGGACGAAGTGGTAAAAGCATTGGAGCAGCTTCAGGAATCAAAAGACTCACACAAAAGAAGCACTAATCCGAAAGAGCATCACACGCGTGGTTCCAGCAATCTCAATGGCCGTCATGCTCCTGGCAAAGGCAGTGCAGATGCTCCCAAAATGGCCTCGGCTTATCCACGGCCCTCAGTTTCTCTTCTTCAGTGA 1065 0.4704 MSQLSYNELRAATKNFRPDSVLGEGGFGSVFKGWIDEHSLAATKPGIGMIVAVKRLNLDGLQGHKEWLAEINYLGQLQHPNLVKLIGYCLEDDHRLLVYEFMPKGSVENHLFRRGSYFQPFSWNLRMKIALGAARGLAFLHSPEVQVIYRDFKTANILLDTNYNAKLSDFGLARDGPTGDRSHVSTRVMGTRGYAAPEYLATGHLTSKSDVYSFGVVLLEMISGRKAIDKNQPTGEHNLVEWAKPYLSNKRRVFRVMDPRLEGQYSQSRAQAAAALAMQCLAVEPKARPNMDEVVKALEQLQESKDSHKRSTNPKEHHTRGSSNLNGRHAPGKGSADAPKMASAYPRPSVSLLQ 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01840 354 Gene3D Transferase(Phosphotransferase) domain 1 102 325 - -
Aip04g01840 354 ProSitePatterns Serine/Threonine protein kinases active-site signature. 147 159 IPR008271 GO:0004672|GO:0006468
Aip04g01840 354 PANTHER OS01G0588500 PROTEIN-RELATED 4 336 - -
Aip04g01840 354 Coils Coil 291 311 - -
Aip04g01840 354 PIRSF TyrPK_CSF1-R 126 227 - -
Aip04g01840 354 PIRSF TyrPK_CSF1-R 3 130 - -
Aip04g01840 354 PIRSF TyrPK_CSF1-R 269 348 - -
Aip04g01840 354 MobiDBLite consensus disorder prediction 301 323 - -
Aip04g01840 354 Gene3D Phosphorylase Kinase; domain 1 1 101 - -
Aip04g01840 354 PANTHER KINASE 1B 4 336 - -
Aip04g01840 354 ProSiteProfiles Protein kinase domain profile. 16 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g01840 354 MobiDBLite consensus disorder prediction 301 354 - -
Aip04g01840 354 ProSitePatterns Protein kinases ATP-binding region signature. 22 54 IPR017441 GO:0005524
Aip04g01840 354 Pfam Protein kinase domain 19 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g01840 354 SUPERFAMILY Protein kinase-like (PK-like) 4 301 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01840 Aip-Chr4 82126379 82128568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01840 4 306 Glycoside Hydrolase AT3G07070 52.632 1.27e-105 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Aip04g01840 Pkinase 6.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01840 - - gmx:100819620 597.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g01840 04 82126379 82128568 Aip04g01840 04 82126379 82128568 ECH