Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01838 ATGGCTGGAATTGTTCTGCTTTGCATTGCATCATTACTGGCGTCTCTCTTTGTTGCAACCACTGCCAGGATCCCCGGCGTTTACGCGGGTGGCCCCTGGCAGTCTGCTCATGCCACTTTCTATGGTGGCAGTGATGCCTCTGGAACTATGGGAGGTTCTTGCGGTTACGGCAACTTGTACAGCCAAGGGTACGGAGTGAACACAGCAGCACTGAGCACAGCACTATACAACGATGGCTTCAGCTGCGGCGCGTGCTTCGAGATCAAGTGCGACCAAGATCCCCGTTGGTGCAACCCCGGCAATCCTTCCATACTAATAACCGCCACAAACTTTTGCCCACCAAATTTTGCTCTTCCCAGTGATAATGGCGGTTGGTGTAACCCGCCGAGGCCGCACTTCGATCTTGCCATGCCAATGTTCCTCAAGATCGCTCAATACCGCGCGGGAATCGTTCCGGTTGCTTACCGCCGGGTGCCATGTAGAAAAACAGGAGGTATTAGATTCACAATCAATGGCTTCCGTTACTTCAACCTGGTTCTGATCACCAATGTTGCGGGTGCTGGGGATATCGTGCGCGCGAGTGTGAAAGGTACCAATACTGCGTGGGCAAGCATGAGCCACAACTGGGGGCAAAATTGGCAATCCAATGCCGTTTTAGTGGGCCAGGCTCTCTCCTTTAGAGTCACCGGCAGTGACAAGCGCACCTCAACCTCATGGAATGTGGCACCACCTAATTGGCAGTTTGGACAAACCTTCACGGGCAAGAATTTCCGCGTCTAA 780 0.5321 MAGIVLLCIASLLASLFVATTARIPGVYAGGPWQSAHATFYGGSDASGTMGGSCGYGNLYSQGYGVNTAALSTALYNDGFSCGACFEIKCDQDPRWCNPGNPSILITATNFCPPNFALPSDNGGWCNPPRPHFDLAMPMFLKIAQYRAGIVPVAYRRVPCRKTGGIRFTINGFRYFNLVLITNVAGAGDIVRASVKGTNTAWASMSHNWGQNWQSNAVLVGQALSFRVTGSDKRTSTSWNVAPPNWQFGQTFTGKNFRV 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01838 259 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 165 IPR007112 -
Aip04g01838 259 Pfam Expansin C-terminal domain 166 243 IPR007117 -
Aip04g01838 259 Gene3D - 19 161 IPR036908 -
Aip04g01838 259 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 175 254 IPR007117 -
Aip04g01838 259 SUPERFAMILY Barwin-like endoglucanases 32 183 IPR036908 -
Aip04g01838 259 Pfam Lytic transglycolase 68 155 IPR009009 -
Aip04g01838 259 PANTHER EXPANSIN-A15 4 258 IPR002963 GO:0009664
Aip04g01838 259 Gene3D - 165 257 IPR036749 -
Aip04g01838 259 PRINTS Expansin signature 63 77 IPR002963 GO:0009664
Aip04g01838 259 PRINTS Expansin signature 90 101 IPR002963 GO:0009664
Aip04g01838 259 PRINTS Expansin signature 104 114 IPR002963 GO:0009664
Aip04g01838 259 PRINTS Expansin signature 123 140 IPR002963 GO:0009664
Aip04g01838 259 PRINTS Expansin signature 140 153 IPR002963 GO:0009664
Aip04g01838 259 PRINTS Expansin signature 164 176 IPR002963 GO:0009664
Aip04g01838 259 PRINTS Expansin signature 176 197 IPR002963 GO:0009664
Aip04g01838 259 PRINTS Expansin signature 211 232 IPR002963 GO:0009664
Aip04g01838 259 PRINTS Expansin signature 240 256 IPR002963 GO:0009664
Aip04g01838 259 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576
Aip04g01838 259 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576
Aip04g01838 259 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576
Aip04g01838 259 PRINTS Expansin/Lol pI family signature 148 164 IPR007118 GO:0005576
Aip04g01838 259 PRINTS Expansin/Lol pI family signature 202 216 IPR007118 GO:0005576
Aip04g01838 259 PRINTS Expansin/Lol pI family signature 240 254 IPR007118 GO:0005576
Aip04g01838 259 PANTHER EXPANSIN 4 258 - -
Aip04g01838 259 SUPERFAMILY PHL pollen allergen 162 254 IPR036749 -
Aip04g01838 259 SMART dpbb_1 68 155 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01838 Aip-Chr4 81242812 81245894 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01838 5 259 Expansin Gene Family AT2G39700 81.569 8.48e-158 437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01838 - - gmx:100820154 510.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g01838 04 81242812 81245894 Aip07g01007 07 12916635 12918839 ECH
Aip04g01838 04 81242812 81245894 Aip04g01838 04 81242812 81245894 ECH
Aip04g01838 04 81242812 81245894 Aip08g00413 08 3174388 3176651 ECH
Aip04g01838 04 81242812 81245894 Aip03g00482 03 4684171 4686686 ECH