Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01828 ATGATAATGGATCCACATCTTCATGGATTTGGTGGTTCCACAAAGGAATTCCGGTTGGAGAATCAGTCTTTGCCAATTCTGCAGAATCAGAGGTTTGAAAATGGTTTATTTGATCAAAGTAGGGAGTTTGGTTACCTTCAGTCCAATCTTCTGCCACCAGCTAATAATACACATTCATCCTCAATTTTGACAAATGATGAGCCTTCTCCGGAGGATTGCGATTTTTCTGATGCAATTTTAGGTTACATCAATCAAATCCTAATGGAAGAAGACATGGAAGACAAGACATGTATGCTTCAAGATTCTTTGGATCTTCAAGTTGCCGAGAAATCGTTATATGAGGTGATAGGTGAAAAGTATCCATCTCAGCCATTAGGGATTAATCCAAATGATGGGGAAGGAGTTAATGACTTGTTTGAAAACTATGGTAGTGATCTTGTTAATGACGGCGATCTTAGTAGCATTGTTATGAGTAGTTCGTTTCTTCGGAACTCAGAGGAAGTACATCGCCAAAACTCTCAAGGGAATAGCATTTCACAGTCATCTCATAGTTCTTCGAATAGTGTAATAAGCAGCTTGGAAGGTCCTGTTGAATCTCCAAATAGCATTCTTCAGGTGCCAGATATGAGCAGTGAGAGTCAATCTATTTTGCAATTTCAGAAGGGTGTCGAGGAGGCTAGTAAATTTCTTCCAAGTGGAAATGGTCTCTTTTCCAATTTTAGTCCAGCTAAGTTGTCGTCACCATTAGAGCCTAAATTGGGGACCAATGCATTTTCTGTTAAGGTAGAGAAGGATGATGGCGAGTCTTTTCTAGCAGGATCCAAGGGAAGAAAGCATTCTGACAGGGAAGAGGGAGACAACGAAGAAAATAGAAGCAGCAAGCAAGCTGCAGTTTATTCGGAACCTACATTGCGGTCAGATATGATTGATATATTCCTGCTTCACAGCGCAGGGGATGGTAAGCAACATTATATGGCACGTCGCGATGCTTTACAGAATAAGAACACGGACAAGATGTTGCCGAGAAATGGTAAGTCAAAAGCATCGAAAACTGGGAAGGGGCGTGGTAAGAAACAAAATGGGAGAAAAGAAGTGGTTGATTTGAGAACCCTTCTGGTTCTTTGTGCACAAGCTGTTGCAGCCGATGACTCCAAAAGTGCCCATGAGTTTCTTAAGCAGATCAAGCAGCACTCGAGTCCTTTTGGAGATGGAAGTCAGAGGTTAGCTCATATGTTTTCAGATGGCCTCGAGGCACGCTTGGCAGGCACTGGAAGCCAAATCTATAAAGGCTTAATTTGTAAAAGAACATCAGCAGCTGATGTTCTTAAAGCATACCATCTCTACCTTGCTGCTTGCCCATTTAGAAAGATTTCAAATTTTATGTCAAACATTACAATTAGGACATCTTGTGCAGACTCAATGAGAGTTCATGTTATAGATTTTGGTATCCTTTATGGTTTCCAGTGGCCGACTTTTATTCAGAGGCTTTCGTGGAGATCTGGGGGACCACCGAAACTTCGGATCACAGGAATTGACTTCCCACAACCTGGTTTCAGGCCTGCGGAGAGAATCGTAGAAACGGGACGTCGCTTGGCAGCTTATGCTGAAACTTTCAATGTCCCATTTGAGTACAACGCCATAGCGAAAAAGTGGGAAACAATTCAACTCGAAGAACTGAAGATCGATAGAGATGAGTATGTTGTTGTTACTTGTTTTTATCGAGGCAAAAACTTATTGGATGAATCTGTGGTGGTGGAAAGTCCAAGGAATAAGTTCCTCAATTTGATAAGGAAGATCAACCCGGATATCTTCATTCATGGCATTATTAATGGGGCCTTTAATGCCCCTTTTTTTGTTACTCGATTCAGGGAAGCACTGTTTCACTACTCTTCACTGTTTGACATGCTTGAAACTATTGTGCCTCGTGAAGACTGGGAGAGGATGCTGATTGAGAAGGAGATATTCGGGCGAGAAGCATTGAATGTTATAGCCTGTGAAGGCTGCGAGAGAGTCGAGCGGCCAGAGACATATAAGCAGTGGCAAGTCCGAATATTAAGGGCCGGGTTTATGCAACAACCTTTTGATCCTAAGTTAATAGGGATGGCAATGGATAAAGTAAGGTCTGGCTTTCACAAGGATTTCCTAATTGATGAAGATGGTCAGTGGCTGGTGCAAGGTTGGAAGGGGCGAATCATTTACGCACTCTCTTGTTGGAAACCTGCATGA 2226 0.4232 MIMDPHLHGFGGSTKEFRLENQSLPILQNQRFENGLFDQSREFGYLQSNLLPPANNTHSSSILTNDEPSPEDCDFSDAILGYINQILMEEDMEDKTCMLQDSLDLQVAEKSLYEVIGEKYPSQPLGINPNDGEGVNDLFENYGSDLVNDGDLSSIVMSSSFLRNSEEVHRQNSQGNSISQSSHSSSNSVISSLEGPVESPNSILQVPDMSSESQSILQFQKGVEEASKFLPSGNGLFSNFSPAKLSSPLEPKLGTNAFSVKVEKDDGESFLAGSKGRKHSDREEGDNEENRSSKQAAVYSEPTLRSDMIDIFLLHSAGDGKQHYMARRDALQNKNTDKMLPRNGKSKASKTGKGRGKKQNGRKEVVDLRTLLVLCAQAVAADDSKSAHEFLKQIKQHSSPFGDGSQRLAHMFSDGLEARLAGTGSQIYKGLICKRTSAADVLKAYHLYLAACPFRKISNFMSNITIRTSCADSMRVHVIDFGILYGFQWPTFIQRLSWRSGGPPKLRITGIDFPQPGFRPAERIVETGRRLAAYAETFNVPFEYNAIAKKWETIQLEELKIDRDEYVVVTCFYRGKNLLDESVVVESPRNKFLNLIRKINPDIFIHGIINGAFNAPFFVTRFREALFHYSSLFDMLETIVPREDWERMLIEKEIFGREALNVIACEGCERVERPETYKQWQVRILRAGFMQQPFDPKLIGMAMDKVRSGFHKDFLIDEDGQWLVQGWKGRIIYALSCWKPA 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01828 741 MobiDBLite consensus disorder prediction 166 209 - -
Aip04g01828 741 MobiDBLite consensus disorder prediction 269 300 - -
Aip04g01828 741 MobiDBLite consensus disorder prediction 332 361 - -
Aip04g01828 741 PANTHER SCARECROW-LIKE PROTEIN 9 46 740 - -
Aip04g01828 741 MobiDBLite consensus disorder prediction 269 291 - -
Aip04g01828 741 ProSiteProfiles GRAS family profile. 359 739 IPR005202 -
Aip04g01828 741 Pfam GRAS domain family 368 739 IPR005202 -
Aip04g01828 741 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 46 740 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01828 Aip-Chr4 80711104 80714445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01828 45 740 GRAS Transcription Factor Family AT2G37650 52.045 0.0 691
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Aip04g01828 GRAS 6.4e-111 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01828 - - ccaj:109816616 1118.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g01828 04 80711104 80714445 Aip04g01828 04 80711104 80714445 ECH
Aip04g01828 04 80711104 80714445 Aip08g00408 08 3125469 3127430 ECH