Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01814 ATGGCCGCCGTCCGTCGCGCACGGGATTGGGCTCTTTTAGGCGTGGTCGGTGGTGGTCTTTGTGCTCTCAAAGTCGCTAATCATCCGCTACTTCGTCGCAGCCCTGGAGTGGTGGTGCTCCGACTTCGCAGCCAGTCATCGCAGAACCGCCTCCGATCTTGGTCACCGCCCTCAGGCATCGTCTTTGTCACCGCAAATGCGAACATCGCTGCTGATGACCCCGCGAGAAAAGCGGATTCAAATTTGAAATTTGAAATCCCTTTCATAGATCATATATGTGTTACCATGGCAGTAATAGTTAAACTAATAGTTGATTCTGAATTGGAGTTAAACTATGGAAGACGCTATGGTTTACTTGGATTAAATGGATGTGGAAATTCTACTTTGCTTACGGCAATATGTTACTGTGAACTTCCGATTCCTGAGCACATGGATATCTATCACCTTAGCAGGGAAATTGAAGCCATAGATATGTCTGCATTGGAGGCAGTCATAAACTGCGATGAGGAAAGATTGAAGTTGGAAAAGGAAGCGGAAGCTTTGGCTGCTCGGGATGATGGTGGTGGTGAAACTCTTGAACGGATTTATGAACGATTAGAGGCCCTAGATGCAGCAACTGCAGAAAAGCGTGCTGCTGAAATTTTACATGGTCTCGATTTCAACAAGGAGATGCAAGCAAAGAAGACACATGATTTTTCTGGTGGCTGGAGAATGAGAATTGCACTAGCTCGAACTCTATTTATGAACCCAACCATTCTTCTACTTGATGAACCAACCAATCACCTTGATGGTAGAAGCAAGGCTTCCATGAAGATGGGACTTGCACTCGGACTAGCTACTGCAATTACTCTGCTGTTAGTGATGGTCACCCTCTACTACACGAGACGGAAGAAGCAAAACCCGAAACACCTTCTGGTTGATGCCTTTTTGGAGAGGCATGGACACCTTCAAATCAAGAGGTACAGCTATTCCGACATGAAGAAAGTGACCAACTCCTTCAAAAACAAACTAGTGAAGATCCTAAGTGAATTGAAAGGTGATGGTGAAGATTTCATCAATGAAGTTGTGAGCATGAGCAGAACTTCTCATGTTAACATTGTTGCTCTTCTTGGCTTTTGCTTTGAAGGTTCTAAACAAGCTTTGGTTTATGACTTTATGCCTAATGGGTACAATGACTTCTCATAG 1185 0.4464 MAAVRRARDWALLGVVGGGLCALKVANHPLLRRSPGVVVLRLRSQSSQNRLRSWSPPSGIVFVTANANIAADDPARKADSNLKFEIPFIDHICVTMAVIVKLIVDSELELNYGRRYGLLGLNGCGNSTLLTAICYCELPIPEHMDIYHLSREIEAIDMSALEAVINCDEERLKLEKEAEALAARDDGGGETLERIYERLEALDAATAEKRAAEILHGLDFNKEMQAKKTHDFSGGWRMRIALARTLFMNPTILLLDEPTNHLDGRSKASMKMGLALGLATAITLLLVMVTLYYTRRKKQNPKHLLVDAFLERHGHLQIKRYSYSDMKKVTNSFKNKLVKILSELKGDGEDFINEVVSMSRTSHVNIVALLGFCFEGSKQALVYDFMPNGYNDFS 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01814 394 ProSitePatterns ABC transporters family signature. 232 246 IPR017871 GO:0005524
Aip04g01814 394 SUPERFAMILY Protein kinase-like (PK-like) 323 389 IPR011009 -
Aip04g01814 394 PANTHER - 100 264 - -
Aip04g01814 394 Coils Coil 164 184 - -
Aip04g01814 394 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 86 331 IPR003439 GO:0005524
Aip04g01814 394 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 93 269 IPR027417 -
Aip04g01814 394 Gene3D Phosphorylase Kinase; domain 1 307 386 - -
Aip04g01814 394 Pfam Protein tyrosine and serine/threonine kinase 335 389 IPR001245 GO:0004672|GO:0006468
Aip04g01814 394 Pfam ABC transporter 106 260 IPR003439 GO:0005524
Aip04g01814 394 Gene3D - 92 293 IPR027417 -
Aip04g01814 394 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 100 264 - -
Aip04g01814 394 SMART AAA_5 112 319 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01814 Aip-Chr4 78070473 78076756 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01814 256 389 Receptor kinase-like Gene Family AT5G38260 39.610 9.31e-27 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Aip04g01814 ABC_tran 1.6e-21 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01814 K06185 - ahf:112742710 272.322