Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01813 ATGAACCTGGAAATGAAAGATAGGCAACGGTGGAGAGCCGAAGAGGATGCTTTATTGCGTGCTTATGTCAAACAGTATGGTCCGAGGGAATGGAATCTTGTGTCTCAGCGCATGAACCAACCTCTTAATAGGGATGCCAAGTCATGTCTAGAAAGGTGGAAGAACTACCTTAAGCCCGGAATTAAGAAAGGATCTCTAACCGAGGAAGAGCAGCGCCTTGTCATCAACCTCCAAGCAACACATGGGAACAAGTGGAAGAAAATTGCTGCAGAAATCCCCGGTCGCACTGCCAAGAGGTTAGGGAAGTGGTGGGAAGTTTTCAAAGAGAAGCAGCAAAGAGAGGCCAAGGTAATTAACAAAGGCGTCAACCCAATCGACGATACCAAGTACGAGCACATACTAGAGAGTTTTGCAGAGAAACTAGTGAAGGAGCGCCCTTCGCCACCATCCTTTGCCATGGTTGCTGCCAGTGGTTCTTTTCTGCATAATGATGCATCGGCCCCCTCACCGACTTTGCTTCCTTCTTGGCTCTCTAATTCAAATAGCACCACAACTGTGAGGCCACCATCCCCTTCCGTGACACTAAGTCTTTCTTCCTCGACAGTGGCTGCTTCTCCTCCGTGGTTGCAACCCCCAAGAGGTCCGGAGAACGCTTCTCTAGTCTTGGGGAATGTGGCACCTCACGGATCAGTTGTAGCTTTTGGCGATAACATGGTGGTATCTGAGTTGGTGGAGTGCTGCAAGGAGTTGGGAGAAGTGCATCATGCTTTGGCAGGGCATAAGAAGGAGGCAGCCTGGCGGTTAAGTAGGGTAGAGCTGCAGTTGGAGTCGGAGAAAGCATGTCGAAGAAGGGAGAAGATGGAGGAAATTGAATCGAAGATTAAGGCTCTTAGGGAAGAGCAGGCGGCTGCATTGGAGAGGATTGAAGCTGAATACAAGGAGCAGTTGGCTGTGTTAAGAAGAGATGCGGAAGCCAAGGAGCAGAAGTTGGCTGAGCAATGGGCTGCGAAACACTTGCGCATTACCAAGTTTCTAGAACAAATGGGATGCTGGTCCAGGCTTTCTGAGACAAATGGAAGATAG 1083 0.4949 MNLEMKDRQRWRAEEDALLRAYVKQYGPREWNLVSQRMNQPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVINLQATHGNKWKKIAAEIPGRTAKRLGKWWEVFKEKQQREAKVINKGVNPIDDTKYEHILESFAEKLVKERPSPPSFAMVAASGSFLHNDASAPSPTLLPSWLSNSNSTTTVRPPSPSVTLSLSSSTVAASPPWLQPPRGPENASLVLGNVAPHGSVVAFGDNMVVSELVECCKELGEVHHALAGHKKEAAWRLSRVELQLESEKACRRREKMEEIESKIKALREEQAAALERIEAEYKEQLAVLRRDAEAKEQKLAEQWAAKHLRITKFLEQMGCWSRLSETNGR 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01813 360 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
Aip04g01813 360 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 112 IPR017930 -
Aip04g01813 360 CDD SANT 10 57 IPR001005 -
Aip04g01813 360 SUPERFAMILY Homeodomain-like 8 102 IPR009057 -
Aip04g01813 360 ProSiteProfiles Myb-like domain profile. 3 57 IPR001005 -
Aip04g01813 360 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 5 360 - -
Aip04g01813 360 Coils Coil 287 333 - -
Aip04g01813 360 CDD SANT 67 108 IPR001005 -
Aip04g01813 360 PANTHER TRANSCRIPTION FACTOR AS1 5 360 IPR031055 GO:0005634|GO:0006351|GO:0010338
Aip04g01813 360 Gene3D - 8 62 - -
Aip04g01813 360 SMART sant 62 110 IPR001005 -
Aip04g01813 360 SMART sant 7 59 IPR001005 -
Aip04g01813 360 Pfam Myb-like DNA-binding domain 11 72 - -
Aip04g01813 360 Gene3D - 66 125 - -
Aip04g01813 360 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 3 57 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01813 Aip-Chr4 78066447 78069122 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01813 5 350 MYB Transcription Factor Family AT2G37630 65.659 1.72e-157 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip04g01813 Myb_DNA-bind_6 2.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01813 K09422 - gmx:100819082 573.548