Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aip04g01807 | ATGAACGGGAAAGCCTCAATCTCCAAGGAGCTTAATGCCAAGCATACCAAGATCTTAGAAGGACTTATGAAGCTACAAGAAAATAGGGAATGTGCAGACTGCCGGAACAAGGCACCACGATGGGCGAGTGTGAACCTAGGGATATTCATTTGCATGCAATGTTCCGGGATACACCGAGGTCTTGGAGTGCATATATCCAAGGTGCGATCTACAACCTTGGATACATGGTTGCCCGATCAGGTTTCTTTCATGCAATTTATGGGTAATGAGAAATCAAATAAGGATTGGGAGGCAAAGCTGCCCGCCAATTTCGACAGAAGCACAATGGGAATTGAGAAATTTATTTATTCCAAGTATGTGGAGAAAAAGTGGGCTTCAAAAGAAGGATTAATTAGTGGAGCTACAAATTATTTCCCGAAGAACATTAGTAGGAAACTTTCTTTAGAAGAAAGCATTCTTTCCAAACACGTGGCACAAGTTCTGCCTCCATTGACAAGAGCTCATGGTGGGGGAGATGCAGCGTTCGGCGGCCCTGCACGACGCGAGGAGGGAACTACAGTGGTTGCTTGGGCTATGCAACGCAAGGGAGGGAAGCGTAGTGGTCGGAAGCACTGCACGTCATGA | 624 | 0.4631 | MNGKASISKELNAKHTKILEGLMKLQENRECADCRNKAPRWASVNLGIFICMQCSGIHRGLGVHISKVRSTTLDTWLPDQVSFMQFMGNEKSNKDWEAKLPANFDRSTMGIEKFIYSKYVEKKWASKEGLISGATNYFPKNISRKLSLEESILSKHVAQVLPPLTRAHGGGDAAFGGPARREEGTTVVAWAMQRKGGKRSGRKHCTS | 207 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aip04g01807 | 207 | SMART | arf_gap_3 | 13 | 132 | IPR001164 | GO:0005096 | |
| Aip04g01807 | 207 | PANTHER | ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 | 1 | 170 | IPR044520 | GO:0005096 | |
| Aip04g01807 | 207 | SUPERFAMILY | ArfGap/RecO-like zinc finger | 15 | 126 | IPR037278 | - | |
| Aip04g01807 | 207 | Pfam | Putative GTPase activating protein for Arf | 17 | 127 | IPR001164 | GO:0005096 | |
| Aip04g01807 | 207 | Gene3D | Arf GTPase activating protein | 2 | 130 | IPR038508 | - | |
| Aip04g01807 | 207 | PANTHER | ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD15-RELATED | 1 | 170 | - | - | |
| Aip04g01807 | 207 | PRINTS | HIV Rev interacting protein signature | 28 | 47 | IPR001164 | GO:0005096 | |
| Aip04g01807 | 207 | PRINTS | HIV Rev interacting protein signature | 68 | 89 | IPR001164 | GO:0005096 | |
| Aip04g01807 | 207 | PRINTS | HIV Rev interacting protein signature | 47 | 64 | IPR001164 | GO:0005096 | |
| Aip04g01807 | 207 | ProSiteProfiles | ARF GTPase-activating proteins domain profile. | 16 | 132 | IPR001164 | GO:0005096 | |
| Aip04g01807 | 207 | CDD | ArfGap | 19 | 119 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aip04g01807 | Aip-Chr4 | 76811459 | 76820216 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aip04g01807 | 19 | 107 | C2H2 Transcription Factor Family | AT3G07940 | 50.000 | 1.01e-23 | 93.6 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aip04g01807 | K12486 | - | gmx:100803735 | 275.018 |