Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01787 ATGGTAAGGAAGTTCGAGCAAGAATTTGTTGTGATCGGACAGCAAGCTGATCGAGATGCTAAATCGAAGGACCAAAGGTCTGGGATTCGTTTATCACGGATAGTATTTAGAAAAGAAGCTGTAGATGTTCACTGTTATGGTCAAAGCTTTGACCTCATTCTTATGGACAAGGATATGCCCATCATGAACGGCATTGAGGTTTTTATTGAAAGAATAAAAGAGCTTAAGCAAATTTTGGGTGCACTCAACCGAAGGCGAACCATGTGTGGCACACTGGATTACCTTCCACCTGAGATGGTGGAGAGTATAGAACATGATGCGAGCGTGGATATATGGAGTCTTGGTGTCCTGTGCTATGAGTTTCTATATGGAGTCCCCCCTTTTGAGGCTAAAGAACATTCTGATACTTATAGGAGGAAGGAATCTAATGAATTTAGTGTGCTTCAGGCTACTTTGTTCCGATCAATACTGAATAGGAAATCATGTTATGTTGCCATTTTTTTACTTCAAATTTCTAATCCAAATTCAAATTCAAATGAATACATTTATATATTGCAAGATTGTACAAGTGGATCTCAAGTTCCCCCCAAAACCCATTGTGTGTCTTCTGCTGCAAAGGACCTCATCAGTCAGATGCTGGTCAAGGACTCTTCTCAACGTCTACCTTTACACAAACTTCTTGAACACCCTTGGATTGTTTAG 702 0.4017 MVRKFEQEFVVIGQQADRDAKSKDQRSGIRLSRIVFRKEAVDVHCYGQSFDLILMDKDMPIMNGIEVFIERIKELKQILGALNRRRTMCGTLDYLPPEMVESIEHDASVDIWSLGVLCYEFLYGVPPFEAKEHSDTYRRKESNEFSVLQATLFRSILNRKSCYVAIFLLQISNPNSNSNEYIYILQDCTSGSQVPPKTHCVSSAAKDLISQMLVKDSSQRLPLHKLLEHPWIV 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01787 233 Coils Coil 65 85 - -
Aip04g01787 233 PANTHER SERINE/THREONINE-PROTEIN KINASE AURORA-1 196 233 - -
Aip04g01787 233 PANTHER SERINE/THREONINE-PROTEIN KINASE AURORA-1 78 140 - -
Aip04g01787 233 Pfam Protein kinase domain 85 232 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g01787 233 ProSiteProfiles Protein kinase domain profile. 1 232 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g01787 233 SUPERFAMILY CheY-like 38 73 IPR011006 -
Aip04g01787 233 SMART serkin_6 1 232 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g01787 233 SUPERFAMILY Protein kinase-like (PK-like) 85 232 IPR011009 -
Aip04g01787 233 Gene3D Transferase(Phosphotransferase) domain 1 82 146 - -
Aip04g01787 233 PANTHER SERINE/THREONINE-PROTEIN KINASE IAL-RELATED 196 233 IPR030616 GO:0004672
Aip04g01787 233 PANTHER SERINE/THREONINE-PROTEIN KINASE IAL-RELATED 78 140 IPR030616 GO:0004672
Aip04g01787 233 Gene3D Transferase(Phosphotransferase) domain 1 196 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01787 Aip-Chr4 75576209 75580985 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01787 60 221 AGC Kinase Gene Family AT1G48490 29.012 6.05e-14 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Aur Aip04g01787 Pkinase 7.5e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01787 K08850 - gmx:100775451 169.088