Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01753 ATGGATCATCATCACCACAACAATCATAATCATCATGATGCAGAGATTTATGCAGATGCTGATGATGCAGATAAAGATTTGTGGCTCAACACAACAACAGAACAAGAAGATTTACTTGTTGGGGATGTGAAAACAGATGCATCTATGTTCTACGACGAGTTCCCTCCTCTCCCAGATTTCCCATGCATGTCTTCATCATCGTCTTCGTCTTCAACTCCAACACTTCCATTGAAGAATCTAGCATGCTCAACCACCTCGACCACAACGGCTACCGCAGCAACCTCTTCGTCTTCGTCGTCTGCTTCTTCTTGGGCAGTTCTGAAGCCAGAAGCGGAGGATAATAACAACGGAGAATGGAACTGCAGTAATAAACAGCAACTTTACATGCAACATCATGATCCACTGGACGCAACGGGAGCGTTGTCCTCAACAGCTTCCATGGAGATTTCACAGCCAAAGTTTCCCGATCAAGGTGGGTTTGACGGTGTTGTTGGTGACGTTGATTGCATGGATGATGTGATGGACACTTTTGGGTACATGGAGCTTCTAGAAGCCAACGAGTTCTTTGACCCTTCGTCTATCTTCCAAGGCGAAGAGAATCCCTTAGCGGAATTCACACAAGAGGATCAGGTTTTGCCACAGCAAGAAGAACAACAGCAGCAAGAAAAACCTGCAGTAGTTCATAATCAAAATGATCTTATTGTTCTTAGACCACAGCAAGAAGCAGTAGTGGAAGGTGTTAGTAACAATAATTATCAACAGCTTCTTGGGTTGTGGGAAGCCAGTAACAATAACGATGCAGAGATCCAAGGAGATGGTGGTGGTGGTGGTGCAATTGCGGATGATGAAATGAGCATGGTGTTCCTGGAATGGCTGAAGTCGAACAAGGATAGCGTATCCGCGAGCGATTTGAGGAGCGTGAAGCTTAAGAAGTCGACAATAGAGAGTGCTGCTATGCGATTGGGCGGTGGAAAAGAAGCTATGAAGCAATTGTTGAAGCTGATTCTTGAATGGGTTCAAACCAGCCACCTTCAGAGTAGAAGGCGCAAGGAAAATAATAACGATAACACAGTGGCAAACCCTTTCACGGAACAGTTTCAAAATCCGATTCATCAGAACAACCCAAATGCTTCGAGTTCTTTTGCCATTGAACCAAACACATGTTTCACCCAGCACCAACCATGGATGGATCAAGTGCCTCTAATGGCAGCCGCTCCTCCGTCTCAGTCTCAGCCTCAGCCGCAATTTCAACAACCCACGATTGGGTATGTTGGCGACCCTTACACAAACGGTGCCTCTGCAAACACCATCAATGGCAGCAATAATTTTCAGGCTGGTAATGAATACCATATGCTGGAATCGGCGAACTCATGGCCTCCTTCTCAATACACTGTTACTCCTTACTATACCCAGCCATTTGGGGACCATAGTTTTCAACCTCCGGCCGCTGGTGGCTTCGGTAACCAGTACCCTTATCAGTTTTTCCATGGACCTGGTGATGGATTGATAAGATTAGGACCCTCAGCTACAAAAGAAGCGAGGAAGAAGCGGATGGCGAGGCAGAGAAGGCTTTCCTCTCATTCTAGGCATCATATTAATCTACAGAGTCAGGGTTCTGATCCAAATACAAGATTGGGTGTTGGTGGTGAAAATTGCACTGGTGTTGTATCTGCAGCTCCGGCTAATTGGGTGTATTGGCCAACTATGGCTGGTGCTGTTGCTTCCGTTGCGCCCGTGGCTCCCGCGGAACCGTCGGCTGTGGTGGATAAACCTGCCATGCAGACACAGAATTATCATCATCAGGGTAGGCTCTCATCTGATAGGAGACAGGGTTGGAAGTCGGAGAAGAACTTACGGTTCCTTTTACAAAAGGTGTTGAAGCAAAGCGATGTTGGGAGTCTGGGAAGAATTGTTCTGCCAAAAAAAGAGGCAGAAACACATCTACCAGAACTAGAGGCAAGGGATGGAATCACTATAACAATGGAAGATATTGGCACCTCTCGTGTTTGGAATATGCGCTATAGATACTGGCCAAACAATAAAAGCAGGATGTATTTGCTAGAGAACACAGGTGATTTTGTTAAAGCCAATGGACTCCAAGAGGGAGATTTCATAGTGATATATTCAGATGTGAAGTGTGGAAAATTTATGATAAGAGGAGTTAAAGTAAGGCAACAAGAAGGGGCGAAAGCAGAGGGCAAGAAAACAGGAAAATCTCATAAAAACCAGCATGGGAACAATGCGGTGCCTACAGCTGGTGAACCTCATACGAATGCCACGTCATCATCCACTCATCAAGAAAATGAAAAATAG 2313 0.4561 MDHHHHNNHNHHDAEIYADADDADKDLWLNTTTEQEDLLVGDVKTDASMFYDEFPPLPDFPCMSSSSSSSSTPTLPLKNLACSTTSTTTATAATSSSSSSASSWAVLKPEAEDNNNGEWNCSNKQQLYMQHHDPLDATGALSSTASMEISQPKFPDQGGFDGVVGDVDCMDDVMDTFGYMELLEANEFFDPSSIFQGEENPLAEFTQEDQVLPQQEEQQQQEKPAVVHNQNDLIVLRPQQEAVVEGVSNNNYQQLLGLWEASNNNDAEIQGDGGGGGAIADDEMSMVFLEWLKSNKDSVSASDLRSVKLKKSTIESAAMRLGGGKEAMKQLLKLILEWVQTSHLQSRRRKENNNDNTVANPFTEQFQNPIHQNNPNASSSFAIEPNTCFTQHQPWMDQVPLMAAAPPSQSQPQPQFQQPTIGYVGDPYTNGASANTINGSNNFQAGNEYHMLESANSWPPSQYTVTPYYTQPFGDHSFQPPAAGGFGNQYPYQFFHGPGDGLIRLGPSATKEARKKRMARQRRLSSHSRHHINLQSQGSDPNTRLGVGGENCTGVVSAAPANWVYWPTMAGAVASVAPVAPAEPSAVVDKPAMQTQNYHHQGRLSSDRRQGWKSEKNLRFLLQKVLKQSDVGSLGRIVLPKKEAETHLPELEARDGITITMEDIGTSRVWNMRYRYWPNNKSRMYLLENTGDFVKANGLQEGDFIVIYSDVKCGKFMIRGVKVRQQEGAKAEGKKTGKSHKNQHGNNAVPTAGEPHTNATSSSTHQENEK 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01753 770 Gene3D - 618 738 IPR015300 -
Aip04g01753 770 MobiDBLite consensus disorder prediction 90 105 - -
Aip04g01753 770 Pfam B3 DNA binding domain 623 719 IPR003340 GO:0003677
Aip04g01753 770 MobiDBLite consensus disorder prediction 521 544 - -
Aip04g01753 770 MobiDBLite consensus disorder prediction 530 544 - -
Aip04g01753 770 MobiDBLite consensus disorder prediction 725 739 - -
Aip04g01753 770 CDD BfiI_C_EcoRII_N_B3 620 721 - -
Aip04g01753 770 SUPERFAMILY DNA-binding pseudobarrel domain 621 718 IPR015300 -
Aip04g01753 770 SMART B3_2 622 722 IPR003340 GO:0003677
Aip04g01753 770 ProSiteProfiles B3 DNA-binding domain profile. 622 724 IPR003340 GO:0003677
Aip04g01753 770 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 27 769 IPR044800 GO:0003700
Aip04g01753 770 MobiDBLite consensus disorder prediction 90 121 - -
Aip04g01753 770 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 27 769 - -
Aip04g01753 770 MobiDBLite consensus disorder prediction 742 770 - -
Aip04g01753 770 MobiDBLite consensus disorder prediction 725 770 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01753 Aip-Chr4 70142732 70149335 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01753 13 770 B3 DNA Binding Superfamily AT3G24650 42.119 1.59e-151 457
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aip04g01753 B3 6.4e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01753 - - ahf:112742109 1389.02