Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01698 ATGGTTTATACTTCCATCCCAGCATATATTGATCCAGTCAATTGGCATGAGCAACAGCAACCAAATCATCAACAAAACAACACCGGTGGCACAAGCTCTCAACTTCTTCATCCTCCACCACCACCTCTTCCGCCATCGACTCAGCAACATGGAGCTAGTATCAGACCTGGGTCGATGGCGGACAGGGCAAGGATGGCTAACATACCCATGCAAGAGCCAGCACAAAAGTGTCCAAGATGTGAATCTACCAACACAAAGTTTTGCTACTTCAACAACTACAGCCTCTCTCAGCCCCGGCACTTCTGCAAGACCTGCCGGAGGTACTGGACCCGAGGCGGCGCCTTGAGAAATGTTCCGGTCGGCGGTGGCTGCCGGAGGAACAAGAGGACTAAAGGAACAACCACCAGCAACAACAGCTCCAAGTCACCACCACCGAGCTCTGATCGCGGAGGTCCCACCGTCTCTGGTGGCAGCTTTGCCTCTGAAATCGCAGGCCTAAGCCCTCCCGTGCCCTCGTCGCTGAGATTCATGGCTCCATTAATGCATCATCAGCAACTTGGAGATCACTTTTCAGGAGTTGGTGGCGGTGATTTAGGCCTAAACTACGCCGCAATTTCTGGTCCAATGGGAGGAATATGTGACTTAAATTTTCACATAGGAAGTGCTTTGAGCAGTGGTGGCACCGGCGGCGGCAATGAAGGCAGTTCTTTTCTATCAGCTGCAGGTTTGGAACAATGGAGGGTTCCACAAACACAACAATTTCCTTTCTTTACAGGTTTGGAAGCTTCATCACATGGCCTATACCAATTTGAAAATAGTACTAGTGAGGGTTCTGGATACGGCGGAGGCAGCGGTGGTAGTGGCGGTGCTATTCGGCCGAATAAGGTGTCGACTTTTGCCTCAGTAGTGAAGATGGAAGAAAGTAATAATAATTTGCCAAGGCAGTTTTTGGGGATGAATAGTAATTCATCAAGTAATAGTGAGCATTTTGTTCCTGCTTCTTGGACGCATCTTTCTGGTTTTACTTCTTCCAATACTACCAATAATCCTCCATAG 1056 0.4896 MVYTSIPAYIDPVNWHEQQQPNHQQNNTGGTSSQLLHPPPPPLPPSTQQHGASIRPGSMADRARMANIPMQEPAQKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRTKGTTTSNNSSKSPPPSSDRGGPTVSGGSFASEIAGLSPPVPSSLRFMAPLMHHQQLGDHFSGVGGGDLGLNYAAISGPMGGICDLNFHIGSALSSGGTGGGNEGSSFLSAAGLEQWRVPQTQQFPFFTGLEASSHGLYQFENSTSEGSGYGGGSGGSGGAIRPNKVSTFASVVKMEESNNNLPRQFLGMNSNSSSNSEHFVPASWTHLSGFTSSNTTNNPP 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01698 351 MobiDBLite consensus disorder prediction 18 34 - -
Aip04g01698 351 MobiDBLite consensus disorder prediction 128 154 - -
Aip04g01698 351 Pfam Dof domain, zinc finger 74 129 IPR003851 GO:0003677|GO:0006355
Aip04g01698 351 ProSitePatterns Zinc finger Dof-type signature. 77 113 IPR003851 GO:0003677|GO:0006355
Aip04g01698 351 ProSiteProfiles Zinc finger Dof-type profile. 75 129 IPR003851 GO:0003677|GO:0006355
Aip04g01698 351 PANTHER DOF ZINC FINGER PROTEIN DOF3.6 6 347 - -
Aip04g01698 351 MobiDBLite consensus disorder prediction 18 57 - -
Aip04g01698 351 MobiDBLite consensus disorder prediction 116 162 - -
Aip04g01698 351 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 6 347 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01698 Aip-Chr4 61886653 61888346 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01698 44 347 C2C2-Dof Transcription Factor Family AT3G55370 41.641 2.73e-52 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Aip04g01698 zf-Dof 8.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01698 - - aip:107639364 629.787