Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01678 ATGGTGTATGGCACTCAAGATCTTCAGGAGTTGGTGTTGGAGATCTATATGGAGATCTTAAGCAGGCTAGATCTGTACTTCAAATGGCTGGTGTTGATTGTTGGAGATATACTAGATCAAGATGAAGAAGAAATTGCTATCTTGTCCTTGTTGCGATCATTGGATAAACAGGCAAAGGCAAAAGGTGGAGCTGTGTTTCAGGTCCTTCTTAAAGGCCCAAAGAACTTCAGGAGAGCTGTGAAACACTTGGGTCCTGCTCCTGGTGTTCCTTATAGCTATATCAAGCCTTATGTACGATCTAAGGGAAGCAAGTTTGAGaaggttagaggaaggaagaacagcaaacgacttggggtttaa 360 0.3778 MVYGTQDLQELVLEIYMEILSRLDLYFKWLVLIVGDILDQDEEEIAILSLLRSLDKQAKAKGGAVFQVLLKGPKNFRRAVKHLGPAPGVPYSYIKPYVRSKGSKFEKVRGRKNSKRLGV 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01678 119 PANTHER 60S RIBOSOMAL PROTEIN L18-1-RELATED 66 115 - -
Aip04g01678 119 Pfam Ribosomal protein 60S L18 and 50S L18e 64 116 IPR021131 -
Aip04g01678 119 PANTHER 60S RIBOSOMAL PROTEIN L18 66 115 IPR000039 GO:0003735|GO:0005840|GO:0006412
Aip04g01678 119 Gene3D - 20 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01678 Aip-Chr4 55491834 55495371 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01678 68 115 Cytoplasmic Ribosomal Protein Gene Family AT3G05590 70.833 1.75e-20 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01678 K02883 - aip:107622497 97.0561