Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01666 ATGGTTCTCAGCGAGTTAGTGTCGTTACCGTTGTCAGCACTGTGCCGCTGTGGTGCTCTATCTCTCCCCTTTATCATTGCATCTTCTAGCTTCCAATGGAGCCTTAACCTCAGGTTGCAGTTTCACCAATACCAAGTGGTGGGTAGGGCTCTTCCCATAGAGAAAGATGAGCACCCTAAGATCTATCGCATTAAGCTATGGGCCACCAATGAGGTCTTAGACACTGTTGTGAAGCCTTACAATGCTACTCTCTTTATTCACTATCTTGTTGAAAATGCCGATGAGTGCACTTTGTTTTCTCATCTCCTAAGGCATACTTGCATTGGTACACTGCTGAAAGTATAG 345 0.4522 MVLSELVSLPLSALCRCGALSLPFIIASSSFQWSLNLRLQFHQYQVVGRALPIEKDEHPKIYRIKLWATNEVLDTVVKPYNATLFIHYLVENADECTLFSHLLRHTCIGTLLKV 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01666 114 PANTHER 60S RIBOSOMAL PROTEIN L18A 40 72 - -
Aip04g01666 114 PANTHER 60S RIBOSOMAL PROTEIN L18A 40 72 IPR028877 -
Aip04g01666 114 Pfam Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A 42 74 IPR023573 GO:0003735|GO:0005840|GO:0006412
Aip04g01666 114 Gene3D - 26 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01666 Aip-Chr4 52937697 52938924 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01666 39 72 Cytoplasmic Ribosomal Protein Gene Family AT3G14600 79.412 2.67e-15 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01666 K02882 K22683 csv:101207017 74.3294