Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01652 ATGGGAATATATGATCCGTTCCATCAAGTTAGCATGTGGAGTGACAGCTTCAAAGTTGATGGCAGCCTGAATTCAGTTGCTTCCCCAATGTTAATGGTGAACACAAATATGGAGGAAAGTAAGCCGGAATTTATTCCTCATGAATCAAGGGAACCTTCCGGAGATGATCAAGAGATTACTGATAAAGAAGTTAGTAAGGTGCATCGACGACTGGCGCAAAATCGTGAGGCTGCACGGAAAAGCCGGCTGCGGAAGAAGGCTTATGTTCAACAATTAGAAACAAGCAGATTGAAGCTCATGCAATTGGAGCTGGAGATAGAGAAAGCAAGAAAACATGGTCTATATGTAGGGAGTGCATTAGATGATGGTTATACTGGCTCGCCGGGAACAATAACCTCAGCAGGGTTAACGGTCTTTGAGATTGAATATGGACACTGGGTTGAACAACAGCATCGACAGAATGATGAACTCAGAAATGCATTGCACACTCATGCATCTGATATAGAGCTTCATCTACTTGTTGAGAGCAACTTGAATCATTATGCAAATCTTTTCCAGATGAAAGCAGACATGGCAAAGATTGATGTATTTTATTTGATCTCTGGTGCGTGGAAAGCATCGGTTGAACGCCTTTTTCTTTGGATTGGAGGATCCCGTCCATCGCAGCTTCTAAATATCATAGTGCCACAACTTGAGCCTTTGAGCGATCAACAAATCGCCAGTATTAACAACCTCCGTCTATCGTCCCAGCAAGCAGAAGATGCGCTTTCACTGGGGTTGGAGAAACTACAGCAGGGTCTGGTCCACAGCATAGCAGTTGATCCAATGCTTATAGGAAACTATGGATTTCAGATGGCTGCTGCCCTTGACAATATTGAGGCTCTAGAAGGTTTTGTGAGCCAGGCAGATCACCTCAGGCAACAAACTCTGCTGCACATGTCTCGAATCTTGACGACCGGCCAAGCCGCTCGAGGTTTGATGATAATGGGAGAATACTTACAACGCCTTCGCACTCTTAGCTCTTTATGGTCATCTCGTCCTTGA 1044 0.4464 MGIYDPFHQVSMWSDSFKVDGSLNSVASPMLMVNTNMEESKPEFIPHESREPSGDDQEITDKEVSKVHRRLAQNREAARKSRLRKKAYVQQLETSRLKLMQLELEIEKARKHGLYVGSALDDGYTGSPGTITSAGLTVFEIEYGHWVEQQHRQNDELRNALHTHASDIELHLLVESNLNHYANLFQMKADMAKIDVFYLISGAWKASVERLFLWIGGSRPSQLLNIIVPQLEPLSDQQIASINNLRLSSQQAEDALSLGLEKLQQGLVHSIAVDPMLIGNYGFQMAAALDNIEALEGFVSQADHLRQQTLLHMSRILTTGQAARGLMIMGEYLQRLRTLSSLWSSRP 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01652 347 MobiDBLite consensus disorder prediction 41 59 - -
Aip04g01652 347 Pfam Seed dormancy control 155 228 IPR025422 GO:0006351|GO:0043565
Aip04g01652 347 PANTHER FACTOR TGA7, PUTATIVE-RELATED 1 346 - -
Aip04g01652 347 Pfam bZIP transcription factor 65 95 IPR004827 GO:0003700|GO:0006355
Aip04g01652 347 Gene3D - 65 113 - -
Aip04g01652 347 SUPERFAMILY Leucine zipper domain 66 99 IPR046347 GO:0003700|GO:0006355
Aip04g01652 347 ProSiteProfiles DOG1 domain profile. 136 346 IPR025422 GO:0006351|GO:0043565
Aip04g01652 347 Coils Coil 85 112 - -
Aip04g01652 347 PANTHER TRANSCRIPTION FACTOR TGA9 1 346 - -
Aip04g01652 347 MobiDBLite consensus disorder prediction 40 59 - -
Aip04g01652 347 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 69 84 IPR004827 GO:0003700|GO:0006355
Aip04g01652 347 SMART brlzneu 62 122 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01652 Aip-Chr4 49890730 49897868 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01652 1 347 Calmodulin-binding Proteins AT1G77920 54.722 1.89e-132 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Aip04g01652 DOG1 1.9e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01652 K14431 - gmx:100775882 501.13