Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01640 ATGACCTTGACTTACACAATTGGCACACCCTCTCTCTTCGAAACTTCATCTTTCTCCATCTTCATGCACTCCAAACAACATCGAAGAACCCTAGCACTCCGCGAAGAACCACAGCACTCTGCGAAGAACATCGCCGACGCCGCAATGCCTCCGTCGATGCTCCCTTCGCCGCTGCTCCCTTCTTCGCTGCAAACCCCTAACCCTTTTCCATTTTTCACTGGGCTATCGAGCCAGCAGGGTTTCTACAATGCAAACAAATTTGCCAAGCTTGTGAGAAGAAGAGAGTTCATGGCCAGCGCCGCTGAGGGAACCACCGGGGCTCTTACCTGCGCCACTTGTAGCTGCCATAGAAACTTCCATAGAAGAAAGGAACTAGCTGCACCATACAGCAAGAACCAGTGCAGGCCTAGGGGAAGCGAGGCATTACCTGCTGGTATAGTGTCCAGTACTTCCAGCTTTGAAACGCGACCTCTATGGGATATTCCTGCCGTAAGGAAGAAGCATCATCAGCGGAGACAAGTTGCATACGTGGAAAAGGTTCACTAG 546 0.5128 MTLTYTIGTPSLFETSSFSIFMHSKQHRRTLALREEPQHSAKNIADAAMPPSMLPSPLLPSSLQTPNPFPFFTGLSSQQGFYNANKFAKLVRRREFMASAAEGTTGALTCATCSCHRNFHRRKELAAPYSKNQCRPRGSEALPAGIVSSTSSFETRPLWDIPAVRKKHHQRRQVAYVEKVH 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01640 181 Pfam ZF-HD protein dimerisation region 94 124 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01640 Aip-Chr4 46633089 46640295 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01640 94 123 ZF-HD Transcription Factor Family AT1G74660 66.667 1.02e-09 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Aip04g01640 ZF-HD_dimer 4.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01640 - - adu:107468004 75.485