Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01635 ATGTCTCTTCCAAGAGCCACAACAGTAGGCAATAATAGTCCAAACAACAACACTCTTCAACAGCAACTGATGAACAATGAAGGAGGAGTAGCAGCAGCACCATCTTCTTCTTCTTCTTCTTGGAATAGGATTATCAACAACAACAATAACATCAGAAACTCTGTTAATCCTATACCTCCACAAAAGAGAAGCAAACTTGAAGATAGCGACGAAGATCTGTTCACAGTTCCTGATGTGGAAACCATGCTGAGTGTGCATTCTACAGCGACAAATACAAATAGTGGTAACGTTGATCAAAGCAACGCAATAGACTCTCAGCTTCAAGCTGCCGTTGCTGGGAAACGCCGCCGTGGAAGAAACCCTGTAGACAAGGAATATAGACGCCTCAAGAGATTATTGAGGAACAGGGTTTCTGCCCAACAAGCACGCGAAAGAAAAAAGAAATTGGCAAAGCAACTCTATAACATTGAAGTAAATAGCAATGAAGATGTAGAAGACGACATAGTAGTGGCAACGTGGCGAAGCAAAGTTGCTAACTACACAAGCTTGGTGATAGTACATGGCAAGCAAGTAAGATGCGACTCTGATACGAGTATAGCTAAATGCAAGGAAGGAAGTGAGAGGCTTGCAACGTCAGCAAAAGAGGCGTATTGTGGTTATGGAATCTTCCCACTGCTGCAATCTGATTCGGCGGATTCTGATTTCCCTATTTTCTTCAATTTTGACCATATCGAGGAGGTCTCAGATGAGACTCGCATTAAACGCGCAAGAGCCACAGAGGCAACGAGCTTGAAGTTTGACGCTATTCAATCCTCGTTGATGCAAATCATGCAGGAACAATCTCGATCTCGCTCTCCATCGAGGGCTTTCTCCTATGGTTCGAACTCTGGCCATGGGGTGGATAACGTGAATCGATTGGCTCAGCATAGCCGAGTGAACTTTGATTTGCCCAAGTTTGATGGCTCAGATGCTCTGGGGTGGATATTCTCCATGGATCAATACTTTGAGTTTTTCAAAGTGCCAGACGATGAACAAATTGGGATCACTGCAATACACATGCAGCAAGGTACTGTAGGTGAATATTACGCTGCTTTTGTTGCCTTGGCTAATCGATCTCATATTGAACCTCCTGAGCCTTTGAAGGATTGTTTTATTGGTGGGTTACGAGCTGATATTCACAGAGAGTTCCCAGCAGAATCGCAGTCTACCGAAGAGTCCTCTTTCACCTCTTCTTCTTACTCCTGCGCCTTGCTTAGCTTGACCACCATCGAAGAATTCGGTTCAGAGGCTTTCCCTGCCGAGATACACAACAAGAGGCATAAGGTTTTGTGTTATTGGTGTGATGAGAAATTTTTAGCTACTCATCGTTGTGCCAATAAACAATACCTGCAACTTCACCTTGAATTGGATGATTCTATTGATGCTGACTCTGAAACTACAGATGACACTAATGTTGATATTACTTTGGAGGCTCTAGAACAGGAGGTTGCTGCCCATCATCTCTCTTACAATGCCATGCATGGCACTAAGGGACCTGCTATGATCAGATTCACTGCTGTTATTAATGGACATGAGGTACACACGTTATTGGATGGGGGGGGGAGCTCGGATTGCTTTATCCAACCCCGTATTGCCAAGTTTCTGAACTTACCAATTGAACCTGCTCTTGGTATTAAGGACATGGTTGGTAATTTTCAAATTCTTCTAGTGGAAGGCATGATTCCCAGTTTGGACATCACTATATCGGGCAATACTATCAGCCTCCCTGAGGTCTTTGTTCTTTATGTTGCAGAGGGTGAGTTGGTCATTGGATCCAATTGGTTAGAATCTCTTAAAGCTCACATTACTGACTATGATTCTTCTTTTTTGAGGTTTATGCATTATGGAAAATTTATCACAATTCAAGGGTACAAATTAGCTCATTCGTCACAGGCTCAGTTCCATCATATTAGGCGAATGCTCTCTACTGATGCACTAGCTGAGATGTTTACCTTGGAGGTCCAGCATTCGACGGTGCCTGCAACTCCACTATTGCAATTACCCGATTCACTTAACCCAGCTTTGGACAAATTGCTTCAGCAATATGCGGGTGTATTCAATGTGCCTTCGGGTTTACCCCCTCAGAGGTCACAAGATCATGCAATTCCTTTAATTATGGGTGCTGAACCAGTGAAGGCTCGCCCTTACCATTACCCTCATCATTTGAAGGCTCAGATACAATCAATGGTGAATGAGATGCTGCAGGAGGAAGCTTCTAAGGCTTTCACTCAACTTCAAAAGGCTATATGCTCAAAACCTATGCTGCAATTGCCCAATTTTGATCTACCATTTGAGGTTGAAACTGATGCTTCAGATCAGCAGAGCCTTAAGGCGCTGCTTGAGCAGGACCTACACACTCCAGAACAACACAAATGGATGCACAAGCTATTGGGATATGACTACGAAATTCACTACAAATCTGGTGCTGAGAATGTGGCTGCAGATGCCCATTCGAGGAGTTTCCTTGGGGCTTGGTCCGCACCACGAGCTGATTGGCTGAGGCAGTTGAAGGAGGATTTAGCTCAAAATTCTGATCTTCAAATACTGATAGAAAAGTGTAGTAATTATACTTTGGGGGATTTAAATTACACAGTCCATAATGACCTTCTTTTGTGGAGGAACAGATTGGTGATACCTACAAATAGCTCTTTGATACCTAAAATTTTGCATGAGTACCATGATAGTGTTATTGGAGGTCATGCTGGCATAGTAAAGACCGTAGAGCGAATTGTGCAATCTTTTATTGGCCCAACATGCAGCGAGACATTAGGCGTTATGTTCTAA 2823 0.4339 MSLPRATTVGNNSPNNNTLQQQLMNNEGGVAAAPSSSSSSWNRIINNNNNIRNSVNPIPPQKRSKLEDSDEDLFTVPDVETMLSVHSTATNTNSGNVDQSNAIDSQLQAAVAGKRRRGRNPVDKEYRRLKRLLRNRVSAQQARERKKKLAKQLYNIEVNSNEDVEDDIVVATWRSKVANYTSLVIVHGKQVRCDSDTSIAKCKEGSERLATSAKEAYCGYGIFPLLQSDSADSDFPIFFNFDHIEEVSDETRIKRARATEATSLKFDAIQSSLMQIMQEQSRSRSPSRAFSYGSNSGHGVDNVNRLAQHSRVNFDLPKFDGSDALGWIFSMDQYFEFFKVPDDEQIGITAIHMQQGTVGEYYAAFVALANRSHIEPPEPLKDCFIGGLRADIHREFPAESQSTEESSFTSSSYSCALLSLTTIEEFGSEAFPAEIHNKRHKVLCYWCDEKFLATHRCANKQYLQLHLELDDSIDADSETTDDTNVDITLEALEQEVAAHHLSYNAMHGTKGPAMIRFTAVINGHEVHTLLDGGGSSDCFIQPRIAKFLNLPIEPALGIKDMVGNFQILLVEGMIPSLDITISGNTISLPEVFVLYVAEGELVIGSNWLESLKAHITDYDSSFLRFMHYGKFITIQGYKLAHSSQAQFHHIRRMLSTDALAEMFTLEVQHSTVPATPLLQLPDSLNPALDKLLQQYAGVFNVPSGLPPQRSQDHAIPLIMGAEPVKARPYHYPHHLKAQIQSMVNEMLQEEASKAFTQLQKAICSKPMLQLPNFDLPFEVETDASDQQSLKALLEQDLHTPEQHKWMHKLLGYDYEIHYKSGAENVAADAHSRSFLGAWSAPRADWLRQLKEDLAQNSDLQILIEKCSNYTLGDLNYTVHNDLLLWRNRLVIPTNSSLIPKILHEYHDSVIGGHAGIVKTVERIVQSFIGPTCSETLGVMF 940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01635 940 Pfam RNase H-like domain found in reverse transcriptase 748 796 IPR041577 -
Aip04g01635 940 MobiDBLite consensus disorder prediction 1 20 - -
Aip04g01635 940 Gene3D - 859 936 - -
Aip04g01635 940 MobiDBLite consensus disorder prediction 28 67 - -
Aip04g01635 940 SUPERFAMILY Leucine zipper domain 126 155 IPR046347 GO:0003700|GO:0006355
Aip04g01635 940 SUPERFAMILY DNA/RNA polymerases 748 819 IPR043502 -
Aip04g01635 940 PANTHER - 431 749 - -
Aip04g01635 940 MobiDBLite consensus disorder prediction 28 60 - -
Aip04g01635 940 CDD retropepsin_like 517 609 - -
Aip04g01635 940 PANTHER DNA DAMAGE-INDUCIBLE PROTEIN 1-LIKE 431 749 - -
Aip04g01635 940 Pfam Integrase zinc binding domain 894 932 IPR041588 -
Aip04g01635 940 Gene3D - 126 179 - -
Aip04g01635 940 Gene3D Acid Proteases 513 634 IPR021109 -
Aip04g01635 940 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 130 145 IPR004827 GO:0003700|GO:0006355
Aip04g01635 940 Coils Coil 129 159 - -
Aip04g01635 940 SUPERFAMILY DNA/RNA polymerases 691 749 IPR043502 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01635 Aip-Chr4 45460762 45477434 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01635 106 172 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT3G17609 60.563 2.43e-15 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01635 - - aip:107637201 819.69