Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01603 ATGGCCGGCGAAGTTGCCGGAGACCGGACGCCGGAGCTTCTTGCCATCGTCCACGACATCGCCGGTATGTGTGTCGGAGCCGTTGGGACCGGGTCCTCTGCCGCCGCAGCAGCACCCACACCACCACTTCCCGCCGCCATTGCTGGCGACGGCACCTTCAGGAAGGACTGCACCGATCTGGTGCGACGGATCTCTCTCCTCACGCACCTGTTCGAGGAGATTAAGGAGCTGAACAAGGTTGCCGACTCTGCTTCGAGTTCTTCGTCTGAAAGTGGTGGTGGTGGTGCTGCTGCTTCTGATGGCGATGGTGGTGGTGGTGCTGCTTCTTGGTCGTTTGATGTGGTGGTGGCGCTTCAATCGGCGAAGCGTTTGCTTTCGGTGGCGAGGAACTTCCGTTCCAATTGCTCTTCTGATGGAGCTGCCAAGACCATTATCTTCCAATTTCAGAGTGTGACATGGAAATTGGAAAAACTACTAAGCAACTTACCATATGATCATTTAGAAATTTCAGAAGAAGTCAGAGAACAGGTGGACTTAGTCAGAACACAATTAAGACGGGCCACGGATAAATATGGGTTTATGATTTCACAAATGCCATCTTATAAATTATCTGAGCCACTTGCTCAAGAAATCAGTCAGGTTCCTGGTAGAACCACGAGTGGATTGCATAAACAACACAGCTGTCCTGAAAACTTATCAGAATTAGACAAAATCCGTACAAATGATGGAGGGGAAGTTTGCAGCAGACATCAGGGAGTTTCTCGCTTAGAAAGAGCCAGGAGCATCCCTACCATGTCTGAGATCTCCTTAACAAATGTTACTGATACCGAAAGTGAAGAAAACTCCGAGAGTAAGAGCCCACCTGAGGTTAAAAAGTCTGAAGGAGTTCTAATTCCTGAAGACTTTCTTTGCCCTATATCCTTGGAACTAATGAGGGATCCGGTTATTGTTTCCACCGGTCAGACGTATGAGAGATCTTACATACAGAGATGGATAGATTGTGGAAATACAACATGTCCTAAAACCCAGCAGAAGCTCCAGCATTTGACGCTTACGCCAAACTATGTTTTAAGGAGCCTTATTTCTCAGTGGTGTATAGAGCACAACATTGAACAGCCAACAGGACTAACTAATGGAAAAATAAAGAAGAGCGACGGATCGTTCAGAGATGTCACAGGTGACATAGCGGCAATCGAAGTCCTGGTACGGAAGCTCTCCAGCCGGTCTGTCGAGGATCGTAGAGCAGCCGTAACTGAAATTCGATCACTCTCCAAACGTAGCACGGACAACAGGATACTGATTGCTGAAGCCGGAGCAATTCCACTTCTGGTCAACCTTTTAACATCTGAAGATGTATTGACACAGGATAATGCAGTCACTTCGATTCTCAACCTTTCTATATATGAAAACAACAAGGGACTCATAATGCTTGCGGGTGCCATTCCATCCATCGTCCAGGTTCTCCGAGCTGGAACCATGGAAGCAAGAGAAAATGCTGCAGCAACCCTCTTCAGCTTGTCACTTGCCGACGAGAATAAAATAATAATCGGTGCCTCAGGCGCTATACCTGCATTGGTAGAATTGCTCCAAAATGGGAGCCCAAGAGGGAAGAAAGATGCAGCAACAGCATTGTTCAATTTATGTATTTATCAAGGAAACAAAGGCAGGGCCATTAGGGCAGGGATTATCACAGCACTGTTGAAAATGCTTACAGATTCAAGCAAATCGATGGTGGACGAAGCCCTCACAATAATGTCTGTTCTTGCCAGCCATCAAGAGGCAAAGGTAGCTATAGTTAAAGCCAGCACCATACCAGTTTTAATAGATCTTTTGAGGACCGGATTGCCTCGCAACAAAGAGAATGCGGCCGCTATTTTACTCGCATTGTGCAAGAGGGATACCGAAAATCTTGCTTCTTTAAGTAGACTTGGTGCTGTCATACCTCTTACCGAACTCTCAAGGAGCGGTACAGAGAGGGCAAAGAGGAAAGCTACTTCATTATTGGAGCATCTTCGCAAGTTGCAGCAGGTTTGA 2034 0.4705 MAGEVAGDRTPELLAIVHDIAGMCVGAVGTGSSAAAAAPTPPLPAAIAGDGTFRKDCTDLVRRISLLTHLFEEIKELNKVADSASSSSSESGGGGAAASDGDGGGGAASWSFDVVVALQSAKRLLSVARNFRSNCSSDGAAKTIIFQFQSVTWKLEKLLSNLPYDHLEISEEVREQVDLVRTQLRRATDKYGFMISQMPSYKLSEPLAQEISQVPGRTTSGLHKQHSCPENLSELDKIRTNDGGEVCSRHQGVSRLERARSIPTMSEISLTNVTDTESEENSESKSPPEVKKSEGVLIPEDFLCPISLELMRDPVIVSTGQTYERSYIQRWIDCGNTTCPKTQQKLQHLTLTPNYVLRSLISQWCIEHNIEQPTGLTNGKIKKSDGSFRDVTGDIAAIEVLVRKLSSRSVEDRRAAVTEIRSLSKRSTDNRILIAEAGAIPLLVNLLTSEDVLTQDNAVTSILNLSIYENNKGLIMLAGAIPSIVQVLRAGTMEARENAAATLFSLSLADENKIIIGASGAIPALVELLQNGSPRGKKDAATALFNLCIYQGNKGRAIRAGIITALLKMLTDSSKSMVDEALTIMSVLASHQEAKVAIVKASTIPVLIDLLRTGLPRNKENAAAILLALCKRDTENLASLSRLGAVIPLTELSRSGTERAKRKATSLLEHLRKLQQV 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01603 677 MobiDBLite consensus disorder prediction 278 292 - -
Aip04g01603 677 MobiDBLite consensus disorder prediction 258 292 - -
Aip04g01603 677 Gene3D - 387 471 IPR011989 -
Aip04g01603 677 SMART arm_5 468 508 IPR000225 GO:0005515
Aip04g01603 677 SMART arm_5 509 549 IPR000225 GO:0005515
Aip04g01603 677 SMART arm_5 550 590 IPR000225 GO:0005515
Aip04g01603 677 SMART arm_5 427 467 IPR000225 GO:0005515
Aip04g01603 677 SMART arm_5 591 631 IPR000225 GO:0005515
Aip04g01603 677 SMART arm_5 633 673 IPR000225 GO:0005515
Aip04g01603 677 Coils Coil 170 190 - -
Aip04g01603 677 CDD RING-Ubox_PUB 302 344 IPR045210 -
Aip04g01603 677 Gene3D - 576 677 IPR011989 -
Aip04g01603 677 SUPERFAMILY RING/U-box 298 372 - -
Aip04g01603 677 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 297 371 IPR013083 -
Aip04g01603 677 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 11 49 674 - -
Aip04g01603 677 ProSiteProfiles U-box domain profile. 297 371 IPR003613 GO:0004842|GO:0016567
Aip04g01603 677 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 479 521 IPR000225 GO:0005515
Aip04g01603 677 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 561 603 IPR000225 GO:0005515
Aip04g01603 677 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 520 562 IPR000225 GO:0005515
Aip04g01603 677 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 438 480 IPR000225 GO:0005515
Aip04g01603 677 Gene3D - 472 575 IPR011989 -
Aip04g01603 677 SUPERFAMILY ARM repeat 397 671 IPR016024 -
Aip04g01603 677 Pfam U-box domain 298 369 IPR003613 GO:0004842|GO:0016567
Aip04g01603 677 Pfam Armadillo/beta-catenin-like repeat 510 548 IPR000225 GO:0005515
Aip04g01603 677 Pfam Armadillo/beta-catenin-like repeat 428 466 IPR000225 GO:0005515
Aip04g01603 677 SMART Ubox_2 301 364 IPR003613 GO:0004842|GO:0016567
Aip04g01603 677 PANTHER U BOX DOMAIN-CONTAINING 49 674 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01603 Aip-Chr4 41153957 41157794 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01603 51 676 U-box Gene Family AT1G23030 62.303 0.0 741
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01603 - - adu:107484242 1193.33