Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01585 ATGGCTTCTCCACTAAGGTGCGCTTCTGGACGCTGGTTGTTACTAATTCCACAATCTCTGGTTCTCCACGCTGATTCTGGTATTTTCCCTTTGATTTCTTCATTTTCAATCGGTTCTTGCTTTCACTGGGTAAGGTTACCCAATTTGCAATCTTCCAGTGACAATTTAGACTCAAATAGTGTGCTTGAAAATTCTTTAAATGCTAAGAAGAAGCAAATCTCGGAACTGAACATGGAGCTACATAATATTGAAACAACCTTATCAAATGAAAGAGAAGAATATAATGATGTCAAGAAACTTACTGCAATGCTCAATGAAAAGGTTATTTTCAATAAGTTGAAGTCTTCTAAATACAGGGCTATAGTTCCAATTCCAAAGATCACAAACGCAACTTTCTTGCTGACTGGGATCTTTCAGAAGCTGGCAGTGGTGAGACATCTGAGGAGCATAGCTTCTTCTATGGCGGTTTTACCTGGAAGTTCCTCCAGCTTAGAATTGACCATATCTGTGCCAGGCTTTGCTTCTTCACCACCTCTACTTCCATCATCATCTGTGAAAGAATTGGACATAAACCAATTACCATCAGAAGAAGAATGGATTATAGCATCAAACATGGAAGATGAAGAAGAAAGCAGCAATGGAGAACCTCCACGCAAGAAACTTCGTCTCACAAAAGAACAGTCTCGTCTCCTTGAAGAAAGCTTCAGACAAAACCACACTTTAAACCCTAAGCAGAAAGAGTCATTGGCAATGCAACTGAACCTAAGAGCAAGGCAAGTGGAGGTTTGGTTTCAAAACCGTAGGGCCAGGAGCAAGCTGAAGCAGACGGAGATGGAGTGCGAGTACCTGAAGAGGTGGTTTGGATCGTTGACAGAGCAGAAGCGAAGGTTACAGAGGGAAGTGGAAGAGCTGAGAGCCATGAAGGTGGGCCCACCAACCGTGCTCTCTCCTCACACAAGCCAGCCACTCCCAGCTTCAAGCCTAACCATGTGTCCCCGTTGCCAGCGTGTCACCTCAACTGCCACATTATTATCTTCCCCTAAATCGCATCAACCTCCAGCGGCTTCTCCATGA 1074 0.4395 MASPLRCASGRWLLLIPQSLVLHADSGIFPLISSFSIGSCFHWVRLPNLQSSSDNLDSNSVLENSLNAKKKQISELNMELHNIETTLSNEREEYNDVKKLTAMLNEKVIFNKLKSSKYRAIVPIPKITNATFLLTGIFQKLAVVRHLRSIASSMAVLPGSSSSLELTISVPGFASSPPLLPSSSVKELDINQLPSEEEWIIASNMEDEEESSNGEPPRKKLRLTKEQSRLLEESFRQNHTLNPKQKESLAMQLNLRARQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQKRRLQREVEELRAMKVGPPTVLSPHTSQPLPASSLTMCPRCQRVTSTATLLSSPKSHQPPAASP 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01585 357 PANTHER - 154 343 - -
Aip04g01585 357 Coils Coil 59 100 - -
Aip04g01585 357 Pfam Homeodomain 218 272 IPR001356 GO:0003677
Aip04g01585 357 Coils Coil 287 307 - -
Aip04g01585 357 MobiDBLite consensus disorder prediction 203 222 - -
Aip04g01585 357 ProSitePatterns 'Homeobox' domain signature. 249 272 IPR017970 GO:0000981|GO:0006355
Aip04g01585 357 Pfam Homeobox associated leucine zipper 274 308 IPR003106 GO:0006355|GO:0043565
Aip04g01585 357 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-17 154 343 - -
Aip04g01585 357 SMART halz 274 317 IPR003106 GO:0006355|GO:0043565
Aip04g01585 357 SMART HOX_1 216 278 IPR001356 GO:0003677
Aip04g01585 357 SUPERFAMILY Homeodomain-like 204 275 IPR009057 -
Aip04g01585 357 Gene3D - 200 280 - -
Aip04g01585 357 CDD homeodomain 217 275 IPR001356 GO:0003677
Aip04g01585 357 ProSiteProfiles 'Homeobox' domain profile. 214 274 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01585 Aip-Chr4 37760070 37768508 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01585 185 339 Homeobox Transcription Factor Family AT1G70920 62.893 2.26e-58 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Aip04g01585 Homeodomain 8.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01585 K09338 - gmx:100775341 336.265