Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01577 ATGCAACTTCCTGCACAAGAACTTGTGGCTAGGGATTTGCATGATAATGTTTGGACTTTCCGTCATATATATCGAGGGCAACCAAAGCGCCACTTGGTTACAACTGAATGGAGTATATTTGTCAGTGGAAAGAGGCTCTTTGCTGGAGACTCTGTTTTATTTATACGGTTAGCTAACAGGCAACTAGCCAACATATCATCATCGGTATTGTCAAGTGATAGTATGCATATTGGGATTCTTGCGGCAGCTGCTCATGCTTTTGCAAATAATAGTCCCTTTACCGTCTTTTACAATCCTAGGGATAGTCCTTCAGAGTTTGTTATTCCTTTAGCCAAGTACTACAAGTTTGTATATGCAAGCATGGCTTTATTGTCTAAGGCTGCAATTTCCAAAGGAATGACCCCTTTTATTTTTGTTGTTTATAGACAAGCCTTTGCATCAGTTTTCTTATCTCCATTTGCTTTTTTTGACAGTAAGCAGAGTGCTCCCTTGTCATGCAAGTTACTGTGCAATTTGTTTCTTATTTCACTTGTTGGGTTGACAACAAGTTCAACACTTTCCAAAATTTGGATCTGA 576 0.3906 MQLPAQELVARDLHDNVWTFRHIYRGQPKRHLVTTEWSIFVSGKRLFAGDSVLFIRLANRQLANISSSVLSSDSMHIGILAAAAHAFANNSPFTVFYNPRDSPSEFVIPLAKYYKFVYASMALLSKAAISKGMTPFIFVVYRQAFASVFLSPFAFFDSKQSAPLSCKLLCNLFLISLVGLTTSSTLSKIWI 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01577 191 CDD B3_DNA 6 54 IPR003340 GO:0003677
Aip04g01577 191 ProSiteProfiles B3 DNA-binding domain profile. 1 73 IPR003340 GO:0003677
Aip04g01577 191 SUPERFAMILY DNA-binding pseudobarrel domain 3 86 IPR015300 -
Aip04g01577 191 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 122 IPR044835 GO:0003677|GO:0006355|GO:0009725
Aip04g01577 191 Pfam B3 DNA binding domain 6 58 IPR003340 GO:0003677
Aip04g01577 191 PANTHER AUXIN RESPONSE FACTOR 19 1 122 - -
Aip04g01577 191 Pfam Auxin response factor 83 121 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Aip04g01577 191 Gene3D - 1 66 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01577 Aip-Chr4 37439897 37441542 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01577 1 118 B3 DNA Binding Superfamily AT1G30330 70.543 9.42e-49 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Aip04g01577 B3 2.3e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01577 - - qsu:111988787 207.223