Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01570 atgTCTCCAGAGGGATATTCAAGTACTGCCTTTCAAGGGAATGAATCCCAAACAGATAATTGTATTGAAATGTACCTTAGACCACCTTCCACTAGTGAAGAAGCAAGGATAAATGATTGGATCAAAGTGCGGCAGTCTGGAATTAGATATTATTTATCACTTGGTGACCAGAGGATTGTTGACAAAAATTTTATTATCAGGCCTAAAGCAGAGTTTGAGGTTGGACGAATGACATTGGGTGGATTGTTGGCTCTTGGATACACAGTTGTCGTTAGTTATAAACGCTCATCCACAACTGTTGATAATGGCAAGGTTTTGGTGTCTTTTGAAACCATTGATGCCCTTGATGAGACATTCATGGTGATGAGAGGAACTAATAGGAAGACTGTTGGAACAGAAGCAATGAGGCTTGGTATCAATGGACCTTGGATTACTAAATCATATCTTGAGATGATCCTGGATAAAAAAGGTGTTCCTCGCCTTAATACACCACCACTGGTGACTAATACATCTGTGCCTGGAAGTCAAGACACTGCAATCATTGCACCAAAACCAATTCGCGTGACTCCTGACCTTGTTACGGGATTGGAGGATTTGTCTCAGCCATGGACTCGGTCCCCAACAAAATCTAAAATGGAACCTGTTATGGCAACATGGCATTTCATATCTTCAGATTCTTCCCACCCTGACAACTCAGTCCTAGATCCTTCATCTTTCAGGGATACCATTAGGCTTGCTCCAATGCCTGAGTCATATGACCTGGATAGGGGATTGCTTTTGGCTGTTCAAGCCATACAAGCTTTGTTGGAAAATAAAGGTTTCCCAGTCATAGTTGGAATTGGAGGTCCAAGTGGTTCTGGAAAGACTAGTTTGGCTCATAAAATGGCGAATATTATTGGATGTGAAGTGTTATCCCTGGAAAGCTATTATAAACAAGTAAAGGATTTCAAATATGATGACTTCAGCTCTCTTGACTTATCTTTGCTATCAAAGAATATTAGTGACATAAGAAAAGGCCGAAGAACAAAAGTACCAATATTTGACTTGGAAAGTGGTGCTCGGAGTGGCTTCAAGGAACTTGAAGTTTCAGAAGATTGTGGAGTGATAATTTTTGAAGGTGTCTATGCTTTGCATCCTGATATCCGAGTATCACTTGATTTTTGGATTGCTGTTGTAGGAGGAGTTCATTCACATTTGCTTTCACGAGTTCAAAGGGATAAGAGTAGAGTGGGTTGTTTTATTTCCCAGAATGAGATCATGATGACGGTGTTTCCAATGTTCCAGCAGTACATTGAACCTCATCTCGTTCATGCACACCTTAAAATTCGAAATGACTTTGATCCTGTGCTTTCTCCTGAGAGTTCATTGTTTGTGTTGAAGAGTAACAAGAAAGTAGCATATCAAGATATTCTTGCAATTCTTGACCGAGCAAAATTTTGCAGTTCTGTTCAGAAATTTATTGATATTTATATAAGGCTGCCTGGGATCCCTTCTAATGGGCAGTTGACAGAAAGTGATTGTATTCGAGTCAGAATATGTGAAGGAAGATTTGCCTTGCTGATACGTGAGCCTATTAGAGAAGGAAACTTCATCATTCAGCCTAAAGTGGATTTTGATATTGGCATTAGTACAGTTGCTGGTCTTCTTAATCTTGGGTATCAGGCAGTTGCTTACATTGAAGCCTCTGCATTCATCTATCAGGATGGAAAGATTCTAATTGAGGTTGATCATCTACAAGATGTCCCTGGCCCATATATTCAGATCAAGGGTGTTAATAAAGATGCAGTGGCAGCAGCGGGTTCAATGCTTGAATTGGATGGCTCATATACAACTAAGGTTCAACTTGTTTTATTTTAG 1857 0.399 MSPEGYSSTAFQGNESQTDNCIEMYLRPPSTSEEARINDWIKVRQSGIRYYLSLGDQRIVDKNFIIRPKAEFEVGRMTLGGLLALGYTVVVSYKRSSTTVDNGKVLVSFETIDALDETFMVMRGTNRKTVGTEAMRLGINGPWITKSYLEMILDKKGVPRLNTPPLVTNTSVPGSQDTAIIAPKPIRVTPDLVTGLEDLSQPWTRSPTKSKMEPVMATWHFISSDSSHPDNSVLDPSSFRDTIRLAPMPESYDLDRGLLLAVQAIQALLENKGFPVIVGIGGPSGSGKTSLAHKMANIIGCEVLSLESYYKQVKDFKYDDFSSLDLSLLSKNISDIRKGRRTKVPIFDLESGARSGFKELEVSEDCGVIIFEGVYALHPDIRVSLDFWIAVVGGVHSHLLSRVQRDKSRVGCFISQNEIMMTVFPMFQQYIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKKVAYQDILAILDRAKFCSSVQKFIDIYIRLPGIPSNGQLTESDCIRVRICEGRFALLIREPIREGNFIIQPKVDFDIGISTVAGLLNLGYQAVAYIEASAFIYQDGKILIEVDHLQDVPGPYIQIKGVNKDAVAAAGSMLELDGSYTTKVQLVLF 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01570 618 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 362 614 - -
Aip04g01570 618 SMART AAA_5 274 418 IPR003593 -
Aip04g01570 618 Gene3D - 274 451 IPR027417 -
Aip04g01570 618 SUPERFAMILY CYTH-like phosphatases 473 595 IPR033469 -
Aip04g01570 618 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 263 445 IPR027417 -
Aip04g01570 618 PRINTS Uridine kinase signature 275 292 - -
Aip04g01570 618 PRINTS Uridine kinase signature 396 406 - -
Aip04g01570 618 PRINTS Uridine kinase signature 302 313 - -
Aip04g01570 618 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 236 361 - -
Aip04g01570 618 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 15 179 - -
Aip04g01570 618 CDD UMPK_like 277 445 - -
Aip04g01570 618 Pfam Phosphoribulokinase / Uridine kinase family 307 442 IPR006083 GO:0005524|GO:0016301
Aip04g01570 618 PANTHER URIDINE KINASE 236 361 - -
Aip04g01570 618 PANTHER URIDINE KINASE 362 614 - -
Aip04g01570 618 PANTHER URIDINE KINASE 15 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01570 Aip-Chr4 36931205 36941644 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01570 270 433 PRT Gene Family AT1G55810 25.843 1.60e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01570 - - aip:107636390 1174.46