Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01555 ATGTCTTCTCATTCGTTCAGTAACCTCTTTCACTCTTCCACAACCACCACTACTCCAAACTCCTCAACAACTACCCTTCTTGATTCCATTGTTGCAACCCCAAAACAACAACTCACTGCTTGTATTTGCACCCATTGTAACCATCTCCTCACTTTCAATCCTGCAGGTCATGGTGTGGAGCAAGGGACAAATAGTAATAATAATAATAATAATGTGCAATCTCATCATCATCAACTTCAACAAGGAACAAGGTGGAGTCCAACGCCAATTCAGTTATTGGTGCTTGAGGAGTTATATAGGCAAGGAACCAAGACTCCGTCGGCCGAGCAAATCCAGCAGATAGCTTCTCAGCTGCGACGCTTCGGCAAGATCGAAGGCAAGAATGTCTTCTACTGGTTTCAGAATCACAAGGCCAGGGAGCGCCAGAAGCGTCGCCGCCGCGAGATGGAGGAAACTACTGCTGCTGCTTCTGCCAAAGGGTTGAAAGAGACAGGTTGTGAAGTTAAAGAGACAAAGAAGTGGGCATCCACTTCAAACTGCAATGGTGGTGGTGGACATGCAGTTCAGGAATCTATGACTGCAGTTGATATATCAGAAAAGGAGTCAAATGGTTGGAATGAATTTGAAGAGAGAGTTTTGAGGAGAAACAGATCTGAGAGACAGGCTAAGTACTTTAACATTCCCTCCATTAACATTGCAGCAACTGCTTCCGTAGCTTCACAGATAACTCATAACATTCAACTTCTAAGTACTCATCATCATCCTCAACATCACAACTACAATAAACAAGACAATACTTCGTCTCATCCTCGAACCCTTGAGCTTTTCCCAATTCACAAGAACCATGATGATGATGATGACATCATTTCTTTCTCGGACAGGAAGTCCAACAAGCTATGTGCCAATGCGTCCATGGAAGAAGCCCTTAGCTGTGACCAGTTTTTTGAGTTTCTTCCATTAAGGAACTGA 969 0.4376 MSSHSFSNLFHSSTTTTTPNSSTTTLLDSIVATPKQQLTACICTHCNHLLTFNPAGHGVEQGTNSNNNNNNVQSHHHQLQQGTRWSPTPIQLLVLEELYRQGTKTPSAEQIQQIASQLRRFGKIEGKNVFYWFQNHKARERQKRRRREMEETTAAASAKGLKETGCEVKETKKWASTSNCNGGGGHAVQESMTAVDISEKESNGWNEFEERVLRRNRSERQAKYFNIPSINIAATASVASQITHNIQLLSTHHHPQHHNYNKQDNTSSHPRTLELFPIHKNHDDDDDIISFSDRKSNKLCANASMEEALSCDQFFEFLPLRN 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01555 322 Pfam Homeodomain 83 142 IPR001356 GO:0003677
Aip04g01555 322 ProSiteProfiles 'Homeobox' domain profile. 78 143 IPR001356 GO:0003677
Aip04g01555 322 CDD homeodomain 83 138 IPR001356 GO:0003677
Aip04g01555 322 Gene3D - 82 149 - -
Aip04g01555 322 MobiDBLite consensus disorder prediction 60 83 - -
Aip04g01555 322 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 16 322 IPR044555 GO:0003700|GO:0099402
Aip04g01555 322 SUPERFAMILY Homeodomain-like 78 145 IPR009057 -
Aip04g01555 322 SMART HOX_1 80 147 IPR001356 GO:0003677
Aip04g01555 322 MobiDBLite consensus disorder prediction 1 23 - -
Aip04g01555 322 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 16 322 - -
Aip04g01555 322 Coils Coil 139 159 - -
Aip04g01555 322 MobiDBLite consensus disorder prediction 251 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01555 Aip-Chr4 35979879 35982366 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01555 71 181 Wox Gene Family AT3G18010 54.098 1.73e-35 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Aip04g01555 Homeodomain 5.9e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01555 - - adu:107484154 568.155