LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip04g01553	ATGGGGCACGTGAGAACTAAGACGGTGAAGAAATCTTCATGCCAAGTCATCGAGAGGTACTACTCTTGCATCACCCTTGAATTCCACACCACCAAGAAGGTTCTAGAAGAAGTCACACTCATCCCTTCCAAGAGGCTCCGCAACAAGATCGCAGGCTTCTCCACTCACTTCATGAAGCGAATCCAGAAGGGACTTACAGGCATCTCCCTCAAGCTTCAAGAAGAGGAGAGGGAGCATCGCATGGACTTCGTTCCTGATCATATCGAGGTTGATAAGGAAACTATCGACATGCTTCAATCTCTAGGTATGTCTGACATCCCTGGAATCACTCAGGTCAATCCTGCTCCTGTTCAGCAGATTCTGTTTGGCCACCCTGGC	378	0.4894	MGHVRTKTVKKSSCQVIERYYSCITLEFHTTKKVLEEVTLIPSKRLRNKIAGFSTHFMKRIQKGLTGISLKLQEEEREHRMDFVPDHIEVDKETIDMLQSLGMSDIPGITQVNPAPVQQILFGHPG	126

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip04g01553	126	PANTHER	40S RIBOSOMAL PROTEIN S17	1	123	-	-
	Aip04g01553	126	SUPERFAMILY	Rps17e-like	1	62	IPR036401	GO:0003735\|GO:0005840\|GO:0006412
	Aip04g01553	126	ProSitePatterns	Ribosomal protein S17e signature.	41	56	IPR018273	GO:0003735\|GO:0005840\|GO:0006412
	Aip04g01553	126	Gene3D	-	1	62	IPR036401	GO:0003735\|GO:0005840\|GO:0006412
	Aip04g01553	126	Pfam	Ribosomal S17	1	112	IPR001210	GO:0003735\|GO:0005840\|GO:0006412
	Aip04g01553	126	Hamap	30S ribosomal protein S17e [rps17e].	1	63	IPR001210	GO:0003735\|GO:0005840\|GO:0006412
	Aip04g01553	126	PANTHER	40S RIBOSOMAL PROTEIN S17	1	123	IPR001210	GO:0003735\|GO:0005840\|GO:0006412

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip04g01553	Aip-Chr4	35914987	35926106	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip04g01553	1	126	Cytoplasmic Ribosomal Protein Gene Family	AT3G10610	68.841	2.94e-60	180

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip04g01553	K02962		-	gmx:100527036	190.274