Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01548 ATGGAGAACATTCTGGGTCTCATCAAACTACGCATCAAAAGAGGCACTAACCTCAAACCTTGTGATAGTGATTCCAGTGACCCTTATGTCCTTGTCACCTTGGAGGAAACGAAACTGAAAACTCGTCATGAGAAAGATAGCTTGAATCCTGAGTGGAATGAAGAATTGACACTCTATATTAAGGATGTTAATATTCCCATTCATCTTACGGTTTGTGACAAAGACACTTTCACCAAGGACGACAAGATGGGGGAAGCGGATATCGACTTGAAGCCATATCTTCTGTGTGTGAAGGTGGGATTAAGCGAGCTGCCAGAGGGCCATGTGGTGAAGAGGATTGAACCAAATGACTCTAACTGCCTTGCTGAAGAGAGCAAGATCATATGGACTAATGGGAAAGTAATCCAATATATGACTCTAAAATTGAGAAATGTTAACACTGGTGAGCTTCATGTGGAAATTAAGTGGCTTGATGTTCCTGAATCCAAGGGCTTATCTGGGGTTCCACTTTAG 513 0.423 MENILGLIKLRIKRGTNLKPCDSDSSDPYVLVTLEETKLKTRHEKDSLNPEWNEELTLYIKDVNIPIHLTVCDKDTFTKDDKMGEADIDLKPYLLCVKVGLSELPEGHVVKRIEPNDSNCLAEESKIIWTNGKVIQYMTLKLRNVNTGELHVEIKWLDVPESKGLSGVPL 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01548 170 Pfam C2 domain 7 92 IPR000008 -
Aip04g01548 170 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Aip04g01548 170 Gene3D C2 domain 5 165 IPR035892 -
Aip04g01548 170 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 1 167 IPR044562 -
Aip04g01548 170 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 158 IPR035892 -
Aip04g01548 170 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 1 167 - -
Aip04g01548 170 SMART C2_3c 7 102 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01548 Aip-Chr4 35447764 35449504 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01548 38 166 C2H2 Transcription Factor Family AT1G70790 53.435 5.89e-45 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01548 - - gmx:100781585 255.373