Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01474 ATGTTCGCGTCTTCGTTTAGCCATCGTCTTCGTTCGCGTTCTTCGCCGTTCAAGTTTGCTCGGTGTTCACCGTTCACGTTCACTTGCCGTTCACCGTTCGCATTCACGTTCATCTGGAAGCCACGTTGCCCTGCTTCAAACTCTGCGACCAACCCGTGCGCTCCACCTAGCCGTCGAACTGCTCTTGTTTGTCGCTGCCAATTTCCTATTCTGGGCCGTATCAGGAACAGTAGGGTCCGAGTAAAGGATACAACTTTTTCATCTAGACAGTATGGAACCAGAGAAAGTAAAGAAGTTGCTGTAGAAGGGAGAGTTCAGTTTGATCTGCTCCAGCTTCAAAGTGAGGATGAAAATGATGCTGAGCCAAAAACAAAAGTGAGACTCATTGTTCCAAATGGTTCTTGTGGTGGTATAATTGGCAAGGGAGGTGCTACCATTAGGTCATTCATTGAAGAATCTCAAGCTGGAATTAAGATATCTCCTCAGGATAATAATTATTACGGACTGAATGATAGGCTAGTGACACTGACAGGAACTCTCGATGATAACAAATGCTTCAATACGTGA 567 0.455 MFASSFSHRLRSRSSPFKFARCSPFTFTCRSPFAFTFIWKPRCPASNSATNPCAPPSRRTALVCRCQFPILGRIRNSRVRVKDTTFSSRQYGTRESKEVAVEGRVQFDLLQLQSEDENDAEPKTKVRLIVPNGSCGGIIGKGGATIRSFIEESQAGIKISPQDNNYYGLNDRLVTLTGTLDDNKCFNT 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01474 188 ProSiteProfiles Type-1 KH domain profile. 123 188 - -
Aip04g01474 188 Gene3D - 58 126 IPR036397 GO:0003676
Aip04g01474 188 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 113 183 - -
Aip04g01474 188 CDD PCBP_like_KH 126 181 - -
Aip04g01474 188 Gene3D K Homology domain, type 1 127 185 IPR036612 GO:0003723
Aip04g01474 188 PANTHER PROTEIN BTR1 113 183 - -
Aip04g01474 188 Pfam KH domain 126 181 IPR004088 GO:0003723
Aip04g01474 188 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 124 182 IPR036612 GO:0003723
Aip04g01474 188 SMART kh_6 122 187 IPR004087 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01474 Aip-Chr4 31472096 31474280 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01474 58 117 Core DNA Replication Machinery Family AT5G63960 58.333 1.60e-16 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01474 K14944 - aip:107608125 149.058