Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01473 ATGGACAGAGGCGGTTACAATCAGAGACGTGGTGGTGGTAACGCCAGAGGCGACGGAGGAGGAGGCCGCATGAGAGGAAGAGCAAGAGGAAGAAACTTTTCCCAACCCCGACGGCAACCGGCTGACAGTGGCGGAGGAAGAGGCACCGCCGGCAGAGGATTTTATCCGCAACCACCACCACCACAGTGGCAGCCAAGGCAGCAGAACACCATCTCCGGGGGCACATCAACCGCAACCGGCAGCGGAACCGCACCTCCAAGTCTCGTTTCCCCTCCGTCAAACCCTCATCCTCCCTCTCAAAAAGTTGTTCCGGTTGCCGGAATGGGAACGATTGGAACGTCTTCAGACTCCAATGAAACGATCTCACCAATTCAGAGGCCCGACGCCGGTGGCAAGCTGGCGGTTAAGACCAAGACTCTTCAGGTGAACCATTTTTCAGTGAAATTCAACCCGAAGAGCAGGATCATACACTATAATGTCGATGTGAGTCCCCAATCGCCGCCACAACCAGGCCGTCCACCGAGGAGGATATCAAAGACCGAACTGTCATTGATCCGTGACAAGTTGTTCCTTGACCGTCCGGAGCTGCCGCTAGGGATGACTGCCTACGATGGTGAGAAGAACATTTTTAGCATGGTTAGTTTGCCCGAAGAGGCTTTTGTGGTGGAAGTGTCCAAGGGAGAGGACGAGAGGCCCACAGGATTCATCGTGACGTTGACTCTAGTCAACATTCTTGAGATGAGTAGGTTGGAGGATTACATCAGAGGCAGGGCATTGTCAATCCCCAGAGTGATCTTGCAGGGTGTGGATGTGGTCTTCAAGGAGAATCCAACAAAATGTACTGTTCCGGTTGGTCGCTGCTTCTACCCAATGAACCCGAAATTTAGAGAGACGAATCTTCAGCCTGGTGTGATTGCTGTTGGAGGGTTTCAGCATAGTCTCAAACCAACCCGTCAAGGACTGTCATTGTGCTTGGATTATTCGGTTTTGTCTTTCAAGAAACAAATGTCAGTGCTGGATTTCCTTCATGAACAGATTACCGGTTTCAATTTGCGCGAATTCGGAAGGTATAGAAAACATGTTGAAAATGTGCTAATTGGTTTGAAGGTTCATGTCACCCACCGGAGGACCAAACAGAAGTACACAGTTGCTCGATTAACTGGCAAGGACACACGACAAATCAATTTCCCTGCCGTGGATGCACAGGGGAACCCCACTGGGCAGCTTAGCCTTGTTGGCTACTTCCAGAATAGGTATCAGATTGATATCAGGTACAAGGACATCCCTGCATTGGATTTTGGAGGTAACAAGACCAACTATGTGCCAATGGAACTTTGTGTCTTGGTTGAGGGTCAGAGGTATCCCAAAGAGTATTTGGGTAGCAATGCTGCGAAAAATTTGAAAGATATGTGCCTGCCTCCACCGAGAGTGAGGCAAGATGCAATACAGGCGATGGTGAATTCAAGATGTGGACCCTGTGGGGGTGATATCGTTGGAAATTTTGAAATGAATGTCAGCAATGTTATGACAACAGTGACTGGCCGTGTACTTGGACCCCCAAAACTGAAGCTTAGCGATCCAAGTGGCAGGACTATCCATATGGCATTGACTCCAGAGAAGTGCCAATGGAATTTAGTTGAGAAGTCAATGGTTGAAGGTAAGCCAGTTGAGTGTTGGGGCATTCTTGATTTCACCCTCCGCAGTAGATGTGTCTTTTTCGATAATAGATTCATTTCTAAGCTTATTGAGAAGTACAATAAATTTGGCATCATCATGAAGGAGCCAGTTTGGATAGAAAAAACAGACATGTTGAAACTTGGAAACTATAATCAGCTTTCTGACTTACTTGAAAAGATTAATGATGCGGTTTCCAGAAAATATAGATGCCGGCTGCAATTTCTTCTTTGTGTAATGGCCTCCAAAGATCCAGGTTACAAGTGCCTCAAGTGGATTGCTGAGACCAAGGTCGGCATTGTGACACAGTGCTGCTTGTCGGGTAATGCTAATTCTGCAAAAGATCAATATCTTACTAATCTTGCTCTCAAGATCAATGCGAAAATTGGAGGCAGCAATGTGGAGCTTATTAATAGGCTTCCTCACTTTGAGGGCGATGGTCATGTTATGTTTATCGGGGCTGATGTAAATCATCCGGCTTCCAGGGATGCAAATAGTCCATCAATGGCTGCTGTGGTTGCCACTGTTAATTGGCCGGCTGCAAACCGCTATGCTGCTCGAGTTTGTGCTCAAGAGCATCGCACTGAGAAGATTTTGAACTTTGGAGAAGTTTGCCTTGAGCTTGTTTCATGTTATGAAAGGCTGAATGGAGCCAAGCCTGAAAAGATTGTTATCTTCCGTGATGGGGTCAGTGAAAGTCAATTTCAGATGGTTCTTGGTGAAGAGCTTCAGGATTTGAAGAGGACCTTCGAACGTGCAAATTATTCCCCAACCATCACTCTTATTGTGGCACAAAAGCGACACCAGACTCGACTCTTCCCTTCTCCTGCTGAGAATGAGATGACATCTGCTACTCGCGGCAATGTGTTGCCTGGAACAGTGGTGGATACAGTAATCATCCACCCCTTTGAGTTTGACTTTTATCTGGTTAGTCACCATGGAAGCCTGGGAACAAGCAAGCCCACTCATTACCATGTCTTGTGGGATGAGCACGATTTCACATCAGATAAACTCCAGGAACTGATATATGACATGTGCTTTACATTTGCGCGGTGCACGAAACCTGTGTCTTTAGTCCCTCCGGTGTACTATGCTGACCTTGCTGCATACAGAGGACGACAATACTATGAAGCAAAGATTGGGATGCAATCTCCGTATTCAGCTACATCTTCCTCATCATCACCTTTGGCTTCATCCGTTTCTTCAGCTACTTCAAATTCGAATGATATGGATTTCTACAAACTGCATTCTGATCTGGAAAATATAATGTTCTTCATCTAA 2955 0.468 MDRGGYNQRRGGGNARGDGGGGRMRGRARGRNFSQPRRQPADSGGGRGTAGRGFYPQPPPPQWQPRQQNTISGGTSTATGSGTAPPSLVSPPSNPHPPSQKVVPVAGMGTIGTSSDSNETISPIQRPDAGGKLAVKTKTLQVNHFSVKFNPKSRIIHYNVDVSPQSPPQPGRPPRRISKTELSLIRDKLFLDRPELPLGMTAYDGEKNIFSMVSLPEEAFVVEVSKGEDERPTGFIVTLTLVNILEMSRLEDYIRGRALSIPRVILQGVDVVFKENPTKCTVPVGRCFYPMNPKFRETNLQPGVIAVGGFQHSLKPTRQGLSLCLDYSVLSFKKQMSVLDFLHEQITGFNLREFGRYRKHVENVLIGLKVHVTHRRTKQKYTVARLTGKDTRQINFPAVDAQGNPTGQLSLVGYFQNRYQIDIRYKDIPALDFGGNKTNYVPMELCVLVEGQRYPKEYLGSNAAKNLKDMCLPPPRVRQDAIQAMVNSRCGPCGGDIVGNFEMNVSNVMTTVTGRVLGPPKLKLSDPSGRTIHMALTPEKCQWNLVEKSMVEGKPVECWGILDFTLRSRCVFFDNRFISKLIEKYNKFGIIMKEPVWIEKTDMLKLGNYNQLSDLLEKINDAVSRKYRCRLQFLLCVMASKDPGYKCLKWIAETKVGIVTQCCLSGNANSAKDQYLTNLALKINAKIGGSNVELINRLPHFEGDGHVMFIGADVNHPASRDANSPSMAAVVATVNWPAANRYAARVCAQEHRTEKILNFGEVCLELVSCYERLNGAKPEKIVIFRDGVSESQFQMVLGEELQDLKRTFERANYSPTITLIVAQKRHQTRLFPSPAENEMTSATRGNVLPGTVVDTVIIHPFEFDFYLVSHHGSLGTSKPTHYHVLWDEHDFTSDKLQELIYDMCFTFARCTKPVSLVPPVYYADLAAYRGRQYYEAKIGMQSPYSATSSSSSPLASSVSSATSNSNDMDFYKLHSDLENIMFFI 984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01473 984 Gene3D - 703 984 IPR036397 GO:0003676
Aip04g01473 984 Pfam N-terminal domain of argonaute 139 272 IPR032474 -
Aip04g01473 984 CDD PAZ_argonaute_like 336 449 - -
Aip04g01473 984 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 110 983 - -
Aip04g01473 984 Pfam Piwi domain 634 934 IPR003165 GO:0003676
Aip04g01473 984 SMART DUF1785_2 282 335 IPR014811 -
Aip04g01473 984 Gene3D paz domain 331 454 - -
Aip04g01473 984 SMART PAZ_2_a_3 336 482 IPR003100 GO:0005515
Aip04g01473 984 MobiDBLite consensus disorder prediction 1 129 - -
Aip04g01473 984 Gene3D - 516 695 - -
Aip04g01473 984 SUPERFAMILY PAZ domain 332 487 IPR036085 GO:0005515
Aip04g01473 984 CDD Piwi_ago-like 497 934 IPR045246 -
Aip04g01473 984 ProSiteProfiles PAZ domain profile. 336 450 IPR003100 GO:0005515
Aip04g01473 984 ProSiteProfiles Piwi domain profile. 633 935 IPR003165 GO:0003676
Aip04g01473 984 MobiDBLite consensus disorder prediction 66 87 - -
Aip04g01473 984 SUPERFAMILY Ribonuclease H-like 617 935 IPR012337 -
Aip04g01473 984 Pfam PAZ domain 355 463 IPR003100 GO:0005515
Aip04g01473 984 Pfam Argonaute linker 1 domain 283 332 IPR014811 -
Aip04g01473 984 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 110 983 - -
Aip04g01473 984 MobiDBLite consensus disorder prediction 110 124 - -
Aip04g01473 984 SMART Piwi_a_2 633 935 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01473 Aip-Chr4 31423268 31427947 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01473 140 983 Eukaryotic Initiation Factors Gene Family AT1G48410 34.758 7.14e-143 451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01473 K11593 - gmx:100805250 1190.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g01473 04 31423268 31427947 Aip04g01473 04 31423268 31427947 ECH