Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01456 atgtggagCTTGTTGCCGCCATCGACAATTGCTTCGTCTCCCTTCCCCTCCCTCTCATCCAAACTCTCCAATCCACGCGCTCCTCTCCTCTCCCTCACATACTCGCCCTCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCCCTCCGTCATCGAGGTTTCGAAACAATTTGCGGAGTGCATTTCGTTGCCGAATCACGGTACTGTTCAGGTGAGAGCTGCTTCCAATGTGGCTCATGCTTCTCTTGTTACGATAGAGCCTCACACCGAGGATGATTGGGAGGTTTTGGAACTCAATTCCGAACAAGCTGAGGCTGCTATCCTCAACCAGGTCAGGATTGTTCATGAAGGGATGAGATTTCCTTTGTGGTTGCATGGTCACACCGTCATCACATTCCATGTCACTTCTGTTTTCCCGAAGAAAGCGGTGGGTAAGATGATGCCTGTATTATATGGTTATCTTTTTGAATTTTTAAGTAGGAGGGTATTGCATGTTGGGAATTCACATCTAGAATCCTGTGATAAGGAACAAACTGCAAAGATGCTTCTCCGTATACAAGATCCAGGGGTATTATGTCATACCAGAACTGATGTCAAAGGTGTTGAGCTCCATATGGGGCTCACTTCTGTCGCTTTTGTTCACCCAGAAACAGCCAAGCACTTCTCTTTTAACATGCTTCAGCCAGTTTCCTTAGTACCAAGAATATCCAAGGAGAATGCCAATATTTCGAAAACCAATGTTTTGAAATCCAAAGGCGGGTCAACTGGCAATGAAGTTGAGAATGGAAATTTAACTGACAAGAAACAACATCGACAAGCTGTTGTTCATCTCTTATTTTCAGAATCTGTGGCTGCAGGGCATGTGATGTTAGCCAAGTCTCTTCGCCTCTATTTGAGAGCTGGCCTACATACATGGGTTTATTTGAAAGCATATGATATCATTAGGGAGAAAAGTATTCCATCCATCACTTTTTCTCCTTGTCAATTCAAACTATTAAAGCAGGATAGTTCTGCTGAGAAAGATGGTCTGGATGGCCACAATAATCACATGAATGGAAAATTACTTGCGAAATCTATGTCAGGTGACTTTGTGGACCCTATAGATTGGTCAATTAACAATGAAGTTGTTGCAGCTCTTTCTGATGAATCCAACTGCAAAGCAGAGGAAGAGAATGCAAATCAGTCTCAGAATCAAAAGGGGATAAAGAGTCTTGTTCGGCTGTGGTATATTGCACAACTTGAGGCAATTACTTCTATTACGGGTGTAGAGGTTAATTCATTGGTCATGTGTAGCCAAACTTTGCTTGATTTCAAATTAAACTGTTATAACCTTGGGGATAATGGGAGAGCTCCCCTACCTTATAATTCTTCAGAGAATAGTGGCAAGACAGCTGAAGTGTTATTTATTTTGACTTTTGGGGATGAACATCTGCATCATGGGAAACCAAATGCATACAAAGTTGCTCTCGGTAAAAGCCTTAAAAGTATCAATATAGGCGATCTTCAGCTTTTTGAAGGGATGAAATTGGGTGATCCCGTGTCTATTCATTCTATCGAAGAGACAGCATCTCAAGAGCACATTAGTTCAAATGTATCTTTACTTAGCTGGATGGAGAAACCAGCTTCTGATATTATTAATCGGATATTGGTATTGTTATCTTTGAAGTGTGGTCTGTGGTTTGGTTCATGCAACTTGCCACTCCCTGGACATGTTTTAGTGCACGGACCACCAGGCTCTGGGAAAACTTCATTATCAAGGGCTGTAGCCAAATCCCTTGAGAATCATAAAGATATCTTAGCACACATAGTTTTTGTGCCCTGCTCAAAACTTTCTTTGGAGAAGGTCCCAATAATTCGCCAAGAACTTACAAACCATGTAATGGAAGCTTTAAACCATGCGCCCTCCATCGTAATCTTTGATGATCTTGATAGCATAATTTCAACTTCTGATTCTGAAGGATCTCAGCCCTCAACGTCTGTTGCTGGACTCTCAGATATTTTGGTTAACATCATCGATGAATATAGGGAGAAGAGGCAAAAATCATGTGGATTTGGACCGGTAGCCTTCATAGCTTCCATACAGTCACTGGAGAAACTGCCACAGTCTTTGAGCTCTTCAGGACGCTTTGACTTCCACATACAGTTGCCAGCTCCTGCAGCTTCAGAGCGTAAAGCTATGTTGAAGCATGAAATTGAAAGGCGTCACTTGCAATGTGGTGAAGACATCCTACTGGATGTGGCTGTCAAATGTGATGGTTATGATGGCTATGATCTGGTATTCCAGTTCCTTGGACACAGTTCTGTCCATGCTGCTGTTCATCGATTTTTGCCATCAAATGCTGCCAATAATGAGCACGAGAGTCCTGCTTTACTAAGAGAGGATTTCTCCCAGGCAATGCATGGTTTTCTTCCAGTTGCAATGCGTGACATCACAAAATCTGCATCTGATGATGGTCGTTCTGGATGGGATGATGTGGGTGGCCTCGTTGACATCCGAAATGCTATTAAGGAGATGATAGAGTTGCCATCAAAGTTTCCAAAAACTTTTGCGCAAGCACCATTGAGGTTGAGGTCAAACGTCCTTTTATATGGTCCTCCTGGTTGTGGCAAAACTCACATTGTGGGTGCTGCTGCGGCTGCTTCATCGCTTCGATTCATATCAGTGAAAGGACCAGAGCTGTTGAACAAGTATATTGGTGCTTCTGAACAAGCCGTTAGGGATATATTCTCTAAAGCAGCAGCAGCAGCTCCTTGCTTACTATTTTTTGATGAGTTTGATTCTATTGCTCCTAAGAGAGGGCATGACAATACTGGAGTAACTGATCGTGTCGTTAATCAATTTCTGACTGAGTTAGATGGTGTTGAGATTTTAACTGGTGTATTTGTATTTGCTGCTACAAGTAGACCGGATTTACTTGATGCGGCACTGCTGAGACCTGGTAGGTTAGATCGACTTCTTTTCTGTGATTTTCCATCTTGGCATGAGAGATTGGAAATTCTGACTGTTCTTTCTAGAAAGTTACCAATGGCGCATGATATAGATTTGGCCACAGTAGCTAAAATGACTGAGGGATTCAGTGGAGCTGACCTCCAAGCTCTCCTCTCAGATGCACAGCTCGCAGCAGTCCATGAAGTTCTGGACAATTTGGGTGCCTCTGCGCCGGGTAAAGCACCAGTTATTACAGATGCTTTACTGAAGGCCAATGCCTTGAAGGCTAGACCATCTGTTTCAGAAGAAGAGAAAAGGAGACTCTACAGTATCTATGGCCAGTTCCTGGATTCAAAGAGATCTGTCGCTGCTCAGTCAAGGGATGCCAAAGGCAAGAGAGCAACTCTAGCAGAAGGGAAACAAAAGCAACGAGATTGTCGAACTTGGGTTGCAGCCTCTGCGTGGTGTGAGAACGAGACTCAGAAAAAGAAAAGAGAGAGAAAGAAAATCGAAGGCCACGAAGCTCGCATCGCTTCCCAGAAGAAGACGACGCTTCCCAGTTGTTCCGTCTTGGAATCATTCTGCTACATGATGCTGAAGAAGTGA 3585 0.424 MWSLLPPSTIASSPFPSLSSKLSNPRAPLLSLTYSPSXXXXXXXXXXXXXXXXXXXXXXXXXXSPSVIEVSKQFAECISLPNHGTVQVRAASNVAHASLVTIEPHTEDDWEVLELNSEQAEAAILNQVRIVHEGMRFPLWLHGHTVITFHVTSVFPKKAVGKMMPVLYGYLFEFLSRRVLHVGNSHLESCDKEQTAKMLLRIQDPGVLCHTRTDVKGVELHMGLTSVAFVHPETAKHFSFNMLQPVSLVPRISKENANISKTNVLKSKGGSTGNEVENGNLTDKKQHRQAVVHLLFSESVAAGHVMLAKSLRLYLRAGLHTWVYLKAYDIIREKSIPSITFSPCQFKLLKQDSSAEKDGLDGHNNHMNGKLLAKSMSGDFVDPIDWSINNEVVAALSDESNCKAEEENANQSQNQKGIKSLVRLWYIAQLEAITSITGVEVNSLVMCSQTLLDFKLNCYNLGDNGRAPLPYNSSENSGKTAEVLFILTFGDEHLHHGKPNAYKVALGKSLKSINIGDLQLFEGMKLGDPVSIHSIEETASQEHISSNVSLLSWMEKPASDIINRILVLLSLKCGLWFGSCNLPLPGHVLVHGPPGSGKTSLSRAVAKSLENHKDILAHIVFVPCSKLSLEKVPIIRQELTNHVMEALNHAPSIVIFDDLDSIISTSDSEGSQPSTSVAGLSDILVNIIDEYREKRQKSCGFGPVAFIASIQSLEKLPQSLSSSGRFDFHIQLPAPAASERKAMLKHEIERRHLQCGEDILLDVAVKCDGYDGYDLVFQFLGHSSVHAAVHRFLPSNAANNEHESPALLREDFSQAMHGFLPVAMRDITKSASDDGRSGWDDVGGLVDIRNAIKEMIELPSKFPKTFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAASSLRFISVKGPELLNKYIGASEQAVRDIFSKAAAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEILTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSWHERLEILTVLSRKLPMAHDIDLATVAKMTEGFSGADLQALLSDAQLAAVHEVLDNLGASAPGKAPVITDALLKANALKARPSVSEEEKRRLYSIYGQFLDSKRSVAAQSRDAKGKRATLAEGKQKQRDCRTWVAASAWCENETQKKKRERKKIEGHEARIASQKKTTLPSCSVLESFCYMMLKK 1194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01456 1194 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 839 1065 IPR027417 -
Aip04g01456 1194 PANTHER - 67 1127 - -
Aip04g01456 1194 Gene3D - 94 166 - -
Aip04g01456 1194 Coils Coil 1149 1176 - -
Aip04g01456 1194 ProSitePatterns AAA-protein family signature. 977 995 IPR003960 GO:0005524|GO:0016887
Aip04g01456 1194 Gene3D - 538 756 IPR027417 -
Aip04g01456 1194 Gene3D - 1008 1087 - -
Aip04g01456 1194 Gene3D - 838 1099 IPR027417 -
Aip04g01456 1194 SMART AAA_5 584 736 IPR003593 -
Aip04g01456 1194 SMART AAA_5 873 1009 IPR003593 -
Aip04g01456 1194 Pfam ATPase family associated with various cellular activities (AAA) 877 1004 IPR003959 GO:0005524|GO:0016887
Aip04g01456 1194 Pfam ATPase family associated with various cellular activities (AAA) 588 733 IPR003959 GO:0005524|GO:0016887
Aip04g01456 1194 CDD AAA 582 733 - -
Aip04g01456 1194 Pfam Peroxisome biogenesis factor 1, N-terminal 100 164 IPR015342 GO:0005524|GO:0005777|GO:0007031
Aip04g01456 1194 SUPERFAMILY Cdc48 domain 2-like 96 164 IPR029067 -
Aip04g01456 1194 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 568 776 IPR027417 -
Aip04g01456 1194 CDD AAA 843 1006 - -
Aip04g01456 1194 Pfam AAA+ lid domain 1029 1065 IPR041569 -
Aip04g01456 1194 PANTHER AAA-FAMILY ATPASE 67 1127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01456 Aip-Chr4 30356263 30371304 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01456 585 775 Calmodulin-binding Proteins AT3G56690 31.250 7.92e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01456 K13338 - gmx:100803882 1626.68