Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01454 ATGTATTTTACACCATCTCCTCCAGATTTGCAGCACAAAATGAGTACGTCAAACTCAAAAGTGAACTTCATTGCAAGTAGTTCTGGAGTTGTAATAGAAAACATAGCCCCGTTGAAAACCGTGCCCGGTCCTACAACAAATTTGCCGGGGGATGATGACATTCAACCACTTTCAGGATGCCCATTCTATCATGTGATTATTTCAAAATCACATATTTATCCTTGCTTTAGCATGCCGGTTTCAAACGAATTAACACTTCCTTCAGCTGAAGTCCCAGCTATTCTCAAGTATGGAAGCAAGAGCTGGGACATGCAGTATTGCGGACTCGGCAAAAGTTACAAGAAGTTCTTTAACCACAGAGGCTGGAAAAAATTTGCTGTTGATAATCATTTGGAGGTTGGGGACGCTTGCGTCTTTGAACTCAAGGAGTCGAGTGAAGAGAAACTTGTCTTCCAAGTTCAAATTCTTAGAGGTGACCTCCCTGAAACTTTTCTTAAAAGGAAAGAAAAAGAGAAGGAAAAGAAAAAGGCCAGGGCCAAGATTGCAGAAAAGCCAGGAGGTAAAAGTGCAGAAAACCGCAACAGTGCAGAAATGCCAATTCTCATTGACTAG 612 0.4167 MYFTPSPPDLQHKMSTSNSKVNFIASSSGVVIENIAPLKTVPGPTTNLPGDDDIQPLSGCPFYHVIISKSHIYPCFSMPVSNELTLPSAEVPAILKYGSKSWDMQYCGLGKSYKKFFNHRGWKKFAVDNHLEVGDACVFELKESSEEKLVFQVQILRGDLPETFLKRKEKEKEKKKARAKIAEKPGGKSAENRNSAEMPILID 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01454 203 MobiDBLite consensus disorder prediction 167 203 - -
Aip04g01454 203 MobiDBLite consensus disorder prediction 167 187 - -
Aip04g01454 203 ProSiteProfiles B3 DNA-binding domain profile. 99 159 IPR003340 GO:0003677
Aip04g01454 203 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS04G0386900 21 171 - -
Aip04g01454 203 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 21 171 IPR044837 -
Aip04g01454 203 SUPERFAMILY DNA-binding pseudobarrel domain 59 157 IPR015300 -
Aip04g01454 203 Gene3D - 53 159 IPR015300 -
Aip04g01454 203 CDD B3_DNA 61 157 IPR003340 GO:0003677
Aip04g01454 203 SMART B3_2 63 159 IPR003340 GO:0003677
Aip04g01454 203 Pfam B3 DNA binding domain 98 153 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01454 Aip-Chr4 30247219 30248985 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01454 63 162 REM Transcription Factor Family AT4G33280 33.019 6.73e-07 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aip04g01454 B3 2e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01454 - - adu:107484003 351.288