Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01436 ATGGAGAATATTGGTGATGAGTACCATCGTTATTGGGAGACCAGCATGTTCCTCCAAACCCAAGAACTCGACAACTGGGGTTTGGATGAGGCGTTGTCAGGCTACTACGATTCGAGCTCGCCGGACGGTGCCGCTTCGTCGGCGGCGTCGAAGAATATTGTGTCGGAGAGGAATAGAAGGAAGAAGCTCAATGAAAGGCTTTTTGCTCTTCGATCAGTGGTCCCCAACATCAGCAAGATGGATAAGGCTTCAATAATAAAGGATGCAATTGAGTACATACAAAAGTTGCAAGAACAAGAGAGGATAATTCAATCAGAGATAGTTGAGCTTGAGAGTGGTATGATGGTGGAGAAGAAGAATCCTAACAGCTATGAATTTGAGCATCAGGAGCTTCCAATGTTGTTGAGGTCCAAGAAGAAGAGAACAGATGAGCTTTATGATTCTCTCAATTCTAGAAACTCCCCTATTCATATATTAGAGCTGAGGGTAACATACATGGGAGAGAAGACAATAGTGATAAGCTTGACATGCAATAAAAGGACAGATACAATGGTGAAACTGTGTGAAATTTTTGAGTCATTGAAGCTGAAGATCATCACCGCCAATATCACTTCCCTTTCCTCTGCCAGGCTTTTGAAGACAGCAGATGAAGAAGAAAAAGATCTTTTGCAGATAAAGATCCAAACAGCAATTGCAGCTCTTAATGACCCTCTAAGTCCAATGAGCATTTGA 732 0.4249 MENIGDEYHRYWETSMFLQTQELDNWGLDEALSGYYDSSSPDGAASSAASKNIVSERNRRKKLNERLFALRSVVPNISKMDKASIIKDAIEYIQKLQEQERIIQSEIVELESGMMVEKKNPNSYEFEHQELPMLLRSKKKRTDELYDSLNSRNSPIHILELRVTYMGEKTIVISLTCNKRTDTMVKLCEIFESLKLKIITANITSLSSARLLKTADEEEKDLLQIKIQTAIAALNDPLSPMSI 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01436 243 Coils Coil 93 113 - -
Aip04g01436 243 Gene3D - 44 112 IPR036638 GO:0046983
Aip04g01436 243 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 48 114 IPR036638 GO:0046983
Aip04g01436 243 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 237 - -
Aip04g01436 243 Pfam Helix-loop-helix DNA-binding domain 54 97 IPR011598 GO:0046983
Aip04g01436 243 PANTHER TRANSCRIPTION FACTOR BHLH35 1 237 - -
Aip04g01436 243 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 47 96 IPR011598 GO:0046983
Aip04g01436 243 SMART finulus 53 102 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01436 Aip-Chr4 28816232 28826423 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01436 1 207 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 60.849 3.02e-79 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip04g01436 HLH 3.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01436 - - aip:107639158 408.297
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g03326 01 136366111 136369533 Aip04g01436 04 28816232 28826423 PCT