Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01435 ATGGCGACGGAGCAAACCAAGTTCAGCGTTATGTGCAGCCTCTTCAACTGGACGCAGCGTGCCAAGTCGCCGGCCAAGAAGCGCGCAAAGTTCCGCAAGTTCCTCGACTCATTCTGCGCCGACCGCAACTTCTTCCCTGCCATTCGCCTCGTCCTCCCCAACCTCGACCGCGAGCGCGGCTCCTACGGCCTCAAGGAGTCAGTCCTCGCCATTTCCCTCATCGACGCCCTCGGCATGTCTCGCGACTCCGAAGACGCCCTTCGCCTCATTAATTGGCGCAAGGGCGGCGCCAAGACCGGCGCCAATGCCGGCAATTTCGCCCTCGTCGCCACCGAGGTACTGCAGCGCAGGCAAGGTACTGCTTCGGGTGGATTGACGATAAAGGAGGATATTGAAGTTGGAAAAGCTGTGCGTCCTCAGCTAGCTAAGAGAGTTGCTAATGCAGCTGAAGCATGGAAGAAGCTTCATGGGAAGGAAGTGGTTGTCGAGTGCAAATTTGATGGTGACCGCATTCAAATTCACAAAAATGGAACAGAGATACATTTCTTCTCGAGGAACTTCCTTGATCATTCAGAATATGCACATGCAATGTCAGAAATCATACAGCAAAACATCTTGGTAGATAGGTGCATACTTGATGGTGAAATGTTGGTTTGGGACAGTTCCTTGAATCGTTTTGCTGAGTTTGGCTCAAATCAGGAAATAGCCAAGGCAGCAAGGGATGGACTTGACAGTGACAGACAGTTATGCTATGTTGCATTTGATATCCTTTATTTTGGAGATACTAGTGTAATTCACCAAACTTTGAAGGAACGACATGAGATTCTCCGTAAAGTTGTGAGGCCATTGAAGGGGCGCCTTGAAATTTTAGTACCTAATGGTGGTCTTAATAGTCATTGCTCTTCAGGTGAACCATGTTGGTCATTCATTGCTCATAATGTGGATGAAGTTGAGAAATTTTTCAAAGAAACTATAGAGAACAGAGATGAGGGAATAGTTGTTAAAGACCTCGGTTCTAAATGGGAGCCTAGTGATCGAAGTGGAAAGTGGCTAAAATTGAAGCCTGAGTACATTCAAGCTGGCGCTGATCTGGATGTGCTTATCATAGGAGGTTATTATGGCTCTGGACGACGTGGAGGGGAGGTTGCTCAGTTCTTGGTGGGCCTTGCTGAGCGTCCATCCCCAAATACACATCCCAAGCGGTTTATCTCCTTCTGTAGAGTTGGTACTGGGCTTTCTGATGATGAGCTTGATGCGTTAGTAACAAAACTAAAACCTTACTTCCGAAAGTATGAATATCCGAAGAAGAGGCCGCCAAGTTTCTATCAAGTAACTAATCATTCAAAAGAAAGGCCTGATGTGTGGGTTGATAGCCCTGAGAAATCGATTATTCTGTCCATAACCAGTGATATCCGAACTATAGAATCTGAGGTATTTGCTGCACCGTACAGCCTGAGGTTTCCTCGGATTGACAGGGTGAGATATGACAAAGCTTGTATCAAGGGAGACTCTCATATATTTTCAAATATGATGTTTTACTTCGTTAATGTGCCTCCATCTCATTCTCTTGAGAGCTTGCACAAAATGATTGCTGAGAATGGGGGAGTTTTCTCGATGAACTTAAATAACTCTGTCACTCATCGTGTGGCGGCAGAGAGCAAGGGGTTTAAATTTGAAGCTGCAAAACGTCATGGTGATATCATTCACTACAGTTGGATATTAGATTGCTGCTCACAAAAGAAGCTTATCCCCTTACAGCCAAAGTACTTCCTCTTCCTATCTGAAGTAACAAGGAAGAAGTTACAAGAAGAAATTGACGAGTTCTCTGACTCTTACTACATGTATATTGATCTTGGAGAGTTCAAACAGCTCTTAAACACTATTAATAGGTCAGAAGATATCAGTACTATTGATCATTACAGCAAAAAATACTGCCCAAAGGATGAGTGGTCTGTCTTTATTGGATGCTCCATATATTTCCACACTGCAATACCATCAGTGAAAGGGGAATGGGAAGTTCTATTGCAACTTGCTTTGAGAAGATTCAAGGTTGAAGTTCTCATGGGCGGTGGTAGAGTTACTGATAAACTTACTTGTGCAACCCATTTAGTTGTCTTGTCAGTTCCAGGATATGATGCCGAATTTGATGAGCTACAGAGATGTTTTACTTCAGTGGATAGGAGGTTTCTCCAGAGCAAGAGGTTGCATATAATAAAATCCCATTGGTTTGAAGATTGTCTGGACAATAACAAAAGATTACCAGAAGAAAGTTACAGCTTGAGGCCCTCTGTAATAGCAGAGTCAACATCTGAAAATGGTGAAAATGACACCTTAGAGTCTCACTTTGGTGGAGACAATGTACAAGACCAGAATGTACCCTCTGAAAAGGAAAATAGACAGAGAAGTGCAAAAGCTGCTCATGAACACAGTTTGGCCACGGTGTCCCATGAGAATGTTGGCCCAAGGAAGAGAGGAAGACCTGCAGGGAGAGGTGTTAAAAATGTTAAGATGGCTGGCAACAAAGCCCAAAGAGCACGGCCACGCACTGTGAGAAAGCGTGCGAAAATAAGCGAATATGAATCAGACAAAAGTGATTCTCATGACAATGAACCAGAAGAGCAGGAGAATGACACCGGAGAAGCAAGTTTTGATATTTACAATAGACATTTGGAACCTCAGGAGGTCGAGCAACAGGCCAATGTCCAAGTTGCCGAAACAGAAGAAAGTTCTGAACCAAACAGGGCAGTGCATGATTTGAGGAATAGTAGTGAGAGTGAAAGAATGTATGTTCCAGAAATAAAAATGGCAGATAGGACCAATGACCAAAACAGTGAATTGGCTAATGAGATTGAAAATCGGGCTGATCCCATGTTATTTGACAAGATTCCCGGCCTTGCTACCGCCAAGAAAGTTGAGGACACTAAGCATTGTGATCTAAAAGAAGAGAGGCCAGCTGCAGCAGCAGAAAGCAGCGCCTCTATCATTCTGTATATGTATATATAA 3003 0.4426 MATEQTKFSVMCSLFNWTQRAKSPAKKRAKFRKFLDSFCADRNFFPAIRLVLPNLDRERGSYGLKESVLAISLIDALGMSRDSEDALRLINWRKGGAKTGANAGNFALVATEVLQRRQGTASGGLTIKEDIEVGKAVRPQLAKRVANAAEAWKKLHGKEVVVECKFDGDRIQIHKNGTEIHFFSRNFLDHSEYAHAMSEIIQQNILVDRCILDGEMLVWDSSLNRFAEFGSNQEIAKAARDGLDSDRQLCYVAFDILYFGDTSVIHQTLKERHEILRKVVRPLKGRLEILVPNGGLNSHCSSGEPCWSFIAHNVDEVEKFFKETIENRDEGIVVKDLGSKWEPSDRSGKWLKLKPEYIQAGADLDVLIIGGYYGSGRRGGEVAQFLVGLAERPSPNTHPKRFISFCRVGTGLSDDELDALVTKLKPYFRKYEYPKKRPPSFYQVTNHSKERPDVWVDSPEKSIILSITSDIRTIESEVFAAPYSLRFPRIDRVRYDKACIKGDSHIFSNMMFYFVNVPPSHSLESLHKMIAENGGVFSMNLNNSVTHRVAAESKGFKFEAAKRHGDIIHYSWILDCCSQKKLIPLQPKYFLFLSEVTRKKLQEEIDEFSDSYYMYIDLGEFKQLLNTINRSEDISTIDHYSKKYCPKDEWSVFIGCSIYFHTAIPSVKGEWEVLLQLALRRFKVEVLMGGGRVTDKLTCATHLVVLSVPGYDAEFDELQRCFTSVDRRFLQSKRLHIIKSHWFEDCLDNNKRLPEESYSLRPSVIAESTSENGENDTLESHFGGDNVQDQNVPSEKENRQRSAKAAHEHSLATVSHENVGPRKRGRPAGRGVKNVKMAGNKAQRARPRTVRKRAKISEYESDKSDSHDNEPEEQENDTGEASFDIYNRHLEPQEVEQQANVQVAETEESSEPNRAVHDLRNSSESERMYVPEIKMADRTNDQNSELANEIENRADPMLFDKIPGLATAKKVEDTKHCDLKEERPAAAAESSASIILYMYI 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01435 1000 SUPERFAMILY BRCT domain 506 591 IPR036420 -
Aip04g01435 1000 ProSiteProfiles BRCT domain profile. 690 760 IPR001357 -
Aip04g01435 1000 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 134 354 - -
Aip04g01435 1000 SUPERFAMILY BRCT domain 642 762 IPR036420 -
Aip04g01435 1000 MobiDBLite consensus disorder prediction 910 925 - -
Aip04g01435 1000 Pfam BRCT domain, a BRCA1 C-terminus domain 504 587 IPR001357 -
Aip04g01435 1000 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 163 171 IPR016059 GO:0003909
Aip04g01435 1000 Pfam ATP dependent DNA ligase domain 139 354 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Aip04g01435 1000 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 129 498 IPR000977 GO:0003910|GO:0005524|GO:0071897
Aip04g01435 1000 Gene3D - 1 129 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Aip04g01435 1000 ProSitePatterns ATP-dependent DNA ligase signature 2. 330 354 IPR016059 GO:0003909
Aip04g01435 1000 SUPERFAMILY Nucleic acid-binding proteins 363 498 IPR012340 -
Aip04g01435 1000 MobiDBLite consensus disorder prediction 767 878 - -
Aip04g01435 1000 Pfam DNA ligase N terminus 8 129 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Aip04g01435 1000 ProSiteProfiles BRCT domain profile. 502 590 IPR001357 -
Aip04g01435 1000 MobiDBLite consensus disorder prediction 852 870 - -
Aip04g01435 1000 Gene3D - 357 506 IPR012340 -
Aip04g01435 1000 Gene3D BRCT domain 648 760 IPR036420 -
Aip04g01435 1000 Gene3D DNA ligase/mRNA capping enzyme 133 356 - -
Aip04g01435 1000 Gene3D BRCT domain 516 630 IPR036420 -
Aip04g01435 1000 SMART BRCT_7 657 750 IPR001357 -
Aip04g01435 1000 SMART BRCT_7 504 580 IPR001357 -
Aip04g01435 1000 MobiDBLite consensus disorder prediction 896 925 - -
Aip04g01435 1000 MobiDBLite consensus disorder prediction 792 806 - -
Aip04g01435 1000 ProSiteProfiles ATP-dependent DNA ligase family profile. 242 391 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Aip04g01435 1000 MobiDBLite consensus disorder prediction 767 791 - -
Aip04g01435 1000 CDD Adenylation_DNA_ligase_IV 130 359 IPR044125 GO:0005524
Aip04g01435 1000 PANTHER DNA LIGASE 4 129 499 IPR029710 GO:0003677|GO:0003910|GO:0005524|GO:0006281|GO:0051103
Aip04g01435 1000 PANTHER DNA LIGASE 4 500 760 IPR029710 GO:0003677|GO:0003910|GO:0005524|GO:0006281|GO:0051103
Aip04g01435 1000 PANTHER DNA LIGASE 4 3 129 IPR029710 GO:0003677|GO:0003910|GO:0005524|GO:0006281|GO:0051103
Aip04g01435 1000 Pfam ATP dependent DNA ligase C terminal region 378 497 IPR012309 GO:0003910|GO:0006281|GO:0006310
Aip04g01435 1000 CDD BRCT_DNA_ligase_IV_rpt1 506 592 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01435 Aip-Chr4 28802191 28814565 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01435 130 497 Core DNA Replication Machinery Family AT1G08130 29.167 2.94e-31 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01435 K10777 - gmx:100816002 1190.64