Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01339 ATGGAGTGGGACAGCAATTCCGATCTCAGCACCGATGACGACGAACCCTTCCTCCGCGGCGGCTCCAACGACGATGAAGATTTCGGTGTCGGACCTATCCCTTTCCCGGTTCTCCAAACCGCGCCGTGCGGCTTCGTGGTTACTGACGCGCTCGAACCTGACCAACCTATCATATACGTCAACACCGTCTTCGAGATGATTACCGGCTACCGTGCTGAGGAAGTTCTCGGTCGCAACTGCCGCTTTTTGCAGTGTCGAGGCCCATTTGCTAAGCGAAGGCATCCACTGGTGGACTCAACAGTAGTAGCAGAAATTAGAAGATGCCTCGAAGAAGGGGTTGAATTTCAAGGTGAGTTGCTGAACTTTAGGAAAGATGGATCTCCACTTATGAACAGACTGCGGCTGACACCTATATATGGAGATGATGAGATAACTCATGTCATTGGAATCCAGTTCTTCACAGAGGCAAACATTGATCTTGGTCCTCTTCCAGCTTCAACTAAGGAGTCTACTAAATCAGATCGTTTTCGTTCCGTGCTTTCCTCATTGCATCCTCGTGAGGTGGGGGACCGAAATGTGACTCGTGGCCTCTGTGGAATATTGCAATTGAGTGATGAAGTAATTTCTCTCAAGATACTTGCTCGCTTAACTCCAAGAGATATTGCATCAGTTGGTTCTGTATGTAGGCGTTTGTATGAGCTGACAAGAAATGAAGATCTATGGAGAATGGTGTGCCAAAATGCATGGGGATGTGAGACTACACGTGTTTTAGAGACCGTGCCTGGTGCAAGGAGACTTGGATGGGGTCGGTTGGCAAGGGAGTTGACCACACTTGAAGCAGCAGCATGGAGGAAACTGACCGTTGGAGGTGCTGTTGAACCCTCACGCTGTAATTTCAGCGCATGTGCAGTGGGCAACAGGGTTGTCCTATTTGGTGGTGAAGGAGTTAACATGCAACCTATGAATGACACCTTTGTATTAGATCTTAATTCTAGTAATCCCGAGTGGCAACACGTCCAGGTGAGCTCTCCTCCTCCTGGTCGTTGGGGCCACACACTTTCTTGTGTTAATGGTTCCCGTTTGGTTGTATTTGGAGGGTGTGGAAGGCAGGGCTTACTTAATGATGTCTTTGTTCTTGACCTGGATGCAAAGCCTCCAACTTGGCGAGAAATTTCTGGATTGGCACCTCCACTTCCTAGATCATGGCACAGCTCTTGCACTCTTGATGGTACCAAGTTGATAGTTTCTGGAGGCTGTGCTGATTCTGGAGTCCTCTTGAGTGATACTTTCCTCCTTGATTTGTCAATGGAGAAACCTGTCTGGAGGGAGATACCAGTGACATGGACTCCACCTTCTCGCCTAGGCCACACACTTTCTGTTTATGGTGGTAGGAAAATATTGATGTTTGGGGGTCTGGCCAAGAGTGGACCACTGCGTTTTCGCTCGAGTGATGTATTCACGATGGATTTAAGTGAGGATGAACCGTGCTGGAGGTGTGTAACAGGGAGTGGGATGCCTGGTGCTGGAAACCCTGGGGGAATAGCTCCTCCTCCTAGGCTTGATCATGTGGCTGTTAGTCTTCCTGGTGGGAGAATTCTGATATTTGGTGGGTCCGTTGCAGGACTTCATTCTGCCTCCCAACTTTACATCCTTGATCCAACAGATGAGAAGCCAACATGGAGAATCCTAAATGTACCAGGGCGGCCTCCTAGATTTGCATGGGGACATAGCACATGTGTTGTTGGAGGGACAAGAGCTATTGTGCTGGGTGGCCAAACGGGGGAGGAATGGATGCTAAGTGAGCTCCATGAACTTTCCCTGGCAAGTTCTGTAATCTAG 1839 0.491 MEWDSNSDLSTDDDEPFLRGGSNDDEDFGVGPIPFPVLQTAPCGFVVTDALEPDQPIIYVNTVFEMITGYRAEEVLGRNCRFLQCRGPFAKRRHPLVDSTVVAEIRRCLEEGVEFQGELLNFRKDGSPLMNRLRLTPIYGDDEITHVIGIQFFTEANIDLGPLPASTKESTKSDRFRSVLSSLHPREVGDRNVTRGLCGILQLSDEVISLKILARLTPRDIASVGSVCRRLYELTRNEDLWRMVCQNAWGCETTRVLETVPGARRLGWGRLARELTTLEAAAWRKLTVGGAVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVQVSSPPPGRWGHTLSCVNGSRLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEDEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSASQLYILDPTDEKPTWRILNVPGRPPRFAWGHSTCVVGGTRAIVLGGQTGEEWMLSELHELSLASSVI 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01339 612 SUPERFAMILY PYP-like sensor domain (PAS domain) 41 151 IPR035965 -
Aip04g01339 612 SUPERFAMILY Galactose oxidase, central domain 283 597 IPR011043 -
Aip04g01339 612 Gene3D - 452 610 IPR015915 GO:0005515
Aip04g01339 612 Gene3D - 286 451 IPR015915 GO:0005515
Aip04g01339 612 SUPERFAMILY F-box domain 191 261 IPR036047 GO:0005515
Aip04g01339 612 ProSiteProfiles PAS repeat profile. 37 112 IPR000014 -
Aip04g01339 612 Pfam Galactose oxidase, central domain 296 346 - -
Aip04g01339 612 Pfam Kelch motif 453 504 IPR011498 GO:0005515
Aip04g01339 612 Pfam Kelch motif 520 567 IPR011498 GO:0005515
Aip04g01339 612 PANTHER ADAGIO PROTEIN 1-LIKE 1 611 - -
Aip04g01339 612 Gene3D PAS domain 35 162 - -
Aip04g01339 612 TIGRFAM sensory_box: PAS domain S-box protein 54 150 IPR000014 -
Aip04g01339 612 MobiDBLite consensus disorder prediction 1 23 - -
Aip04g01339 612 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 1 611 - -
Aip04g01339 612 CDD PAS 41 143 IPR000014 -
Aip04g01339 612 Pfam PAS domain 42 151 IPR000014 -
Aip04g01339 612 Gene3D - 198 285 - -
Aip04g01339 612 Pfam F-box-like 208 246 IPR001810 GO:0005515
Aip04g01339 612 Pfam Galactose oxidase, central domain 358 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01339 Aip-Chr4 24008345 24013614 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01339 37 152 AGC Kinase Gene Family AT5G58140 34.188 3.93e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01339 K12115 - gmx:100802828 1142.87